Variant report

Variant	rs7642405
Chromosome Location	chr3:23157128-23157129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23119484..23121007-chr3:23156209..23158438,2	MCF-7	breast:
2	chr3:23155801..23158791-chr3:23160046..23163016,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61539785	1.00[EUR][1000 genomes]
rs6806038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73821133	1.00[EUR][1000 genomes]
rs73821157	1.00[EUR][1000 genomes]
rs7629935	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23153800-23157400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr3:23154000-23157200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:23154000-23157600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr3:23154400-23158600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:23154400-23159400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:23154800-23157200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:23154800-23157200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:23155000-23157200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:23155200-23157200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:23155200-23157200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:23155200-23157200	Enhancers	Hela-S3	cervix
12	chr3:23155200-23159000	Weak transcription	Esophagus	oesophagus
13	chr3:23155400-23158400	Enhancers	HSMMtube	muscle
14	chr3:23155600-23157200	Enhancers	Primary B cells from cord blood	blood
15	chr3:23155600-23157600	Weak transcription	Aorta	Aorta
16	chr3:23155800-23157200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:23155800-23157400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:23155800-23157400	Weak transcription	Osteobl	bone
19	chr3:23155800-23160400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:23156000-23157400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:23156200-23157200	Enhancers	Stomach Mucosa	stomach
22	chr3:23156200-23157200	Enhancers	Dnd41	blood
23	chr3:23156200-23158200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:23156200-23158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:23156200-23159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:23156400-23157400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:23156400-23157600	Weak transcription	NHEK	skin
28	chr3:23156400-23159400	Weak transcription	HMEC	breast
29	chr3:23156600-23158600	Weak transcription	Fetal Stomach	stomach
30	chr3:23156600-23159000	Enhancers	Fetal Lung	lung
31	chr3:23156800-23157200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr3:23156800-23158000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:23157000-23157200	Enhancers	Duodenum Smooth Muscle	Duodenum

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