Variant report

Variant	rs764264
Chromosome Location	chr6:133055734-133055735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:133055576-133056726	NB4	blood:	n/a	n/a
2	FOS	chr6:133055608-133056441	MCF10A-Er-Src	breast:	n/a	n/a
3	MBD4	chr6:133055636-133056224	HepG2	liver:	n/a	n/a
4	MYC	chr6:133055562-133056744	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA1	chr6:133055727-133056361	HepG2	liver:	n/a	chr6:133056032-133056047
6	CEBPB	chr6:133055605-133056204	HepG2	liver:	n/a	chr6:133055975-133055988 chr6:133055944-133055961 chr6:133055947-133055958 chr6:133055947-133055960 chr6:133055976-133055987
7	MYBL2	chr6:133055609-133056437	HepG2	liver:	n/a	n/a
8	CEBPB	chr6:133055711-133056252	MCF-7	breast:	n/a	chr6:133055975-133055988 chr6:133055944-133055961 chr6:133055947-133055958 chr6:133055947-133055960 chr6:133055976-133055987
9	TEAD4	chr6:133055701-133056323	HepG2	liver:	n/a	n/a
10	NFIC	chr6:133055627-133056305	HepG2	liver:	n/a	n/a
11	MAX	chr6:133055623-133056325	HepG2	liver:	n/a	n/a
12	FOXA1	chr6:133055688-133056326	HepG2	liver:	n/a	chr6:133056032-133056047
13	STAT3	chr6:133055538-133056481	MCF10A-Er-Src	breast:	n/a	chr6:133055949-133055957
14	FOS	chr6:133055589-133056299	MCF10A-Er-Src	breast:	n/a	n/a
15	EP300	chr6:133055678-133056296	HepG2	liver:	n/a	n/a
16	CEBPB	chr6:133055645-133056194	A549	lung:	n/a	chr6:133055975-133055988 chr6:133055944-133055961 chr6:133055947-133055958 chr6:133055947-133055960 chr6:133055976-133055987
17	EP300	chr6:133055710-133056183	HepG2	liver:	n/a	n/a
18	ARID3A	chr6:133055702-133056460	HepG2	liver:	n/a	n/a
19	STAT3	chr6:133055552-133056837	MCF10A-Er-Src	breast:	n/a	chr6:133055949-133055957
20	POLR2A	chr6:133055092-133056842	MCF10A-Er-Src	breast:	n/a	n/a
21	FOXA2	chr6:133055019-133057117	HepG2	liver:	n/a	n/a
22	FOXA1	chr6:133055728-133056382	HepG2	liver:	n/a	chr6:133056032-133056047
23	MYC	chr6:133055697-133056658	MCF10A-Er-Src	breast:	n/a	n/a
24	FOXA1	chr6:133055642-133056381	HepG2	liver:	n/a	chr6:133056032-133056047
25	STAT3	chr6:133055697-133056459	MCF10A-Er-Src	breast:	n/a	chr6:133055949-133055957
26	POLR2A	chr6:133054417-133058306	MCF10A-Er-Src	breast:	n/a	n/a
27	STAT3	chr6:133055625-133056373	MCF10A-Er-Src	breast:	n/a	chr6:133055949-133055957

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133054032..133057251-chr6:133136548..133139421,3	K562	blood:
2	chr6:133054047..133059196-chr6:133082600..133087082,5	MCF-7	breast:

Variant related genes	Relation type
VNN3	TF binding region
ENSG00000112303	Chromatin interaction
ENSG00000221500	Chromatin interaction
ENSG00000200534	Chromatin interaction
ENSG00000271488	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4406259	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:133052200-133056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:133052400-133058800	Enhancers	Stomach Mucosa	stomach
4	chr6:133052600-133056600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133053000-133055800	Active TSS	Liver	Liver
6	chr6:133053400-133056000	Active TSS	Primary hematopoietic stem cells	blood
7	chr6:133053400-133056800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr6:133053800-133056000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr6:133053800-133056200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:133054400-133058400	Enhancers	HepG2	liver
11	chr6:133055000-133058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:133055200-133057800	Weak transcription	Small Intestine	intestine
13	chr6:133055200-133064800	Weak transcription	Primary T cells from cord blood	blood
14	chr6:133055400-133056000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:133055600-133055800	Enhancers	NHDF-Ad	bronchial
16	chr6:133055600-133056000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:133055600-133056000	Enhancers	Hela-S3	cervix
18	chr6:133055600-133056600	Enhancers	Placenta	Placenta

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