Variant report

Variant	rs7642682
Chromosome Location	chr3:24414576-24414577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24413068..24415725-chr3:24426209..24428030,2	K562	blood:
2	chr3:24402472..24403984-chr3:24412122..24414786,2	MCF-7	breast:
3	chr3:24412895..24415417-chr3:24537290..24539640,2	K562	blood:
4	chr3:24414427..24416637-chr3:24418251..24421032,2	MCF-7	breast:
5	chr3:24412210..24416414-chr3:24416681..24419144,4	MCF-7	breast:
6	chr3:24413191..24415623-chr3:24419821..24421904,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11919155	0.93[ASN][1000 genomes]
rs13324127	0.86[ASN][1000 genomes]
rs6771538	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24394000-24431400	Weak transcription	Gastric	stomach
3	chr3:24407400-24418400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24407800-24414600	Weak transcription	Fetal Kidney	kidney
5	chr3:24409200-24416400	Weak transcription	A549	lung
6	chr3:24409400-24415000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:24409600-24414800	Weak transcription	Liver	Liver
8	chr3:24410000-24414600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:24410200-24414800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:24412000-24414800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:24412200-24417600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:24412200-24417800	Weak transcription	Left Ventricle	heart
13	chr3:24412400-24414800	Weak transcription	Lung	lung
14	chr3:24412400-24414800	Weak transcription	Pancreas	Pancrea
15	chr3:24412400-24421000	Weak transcription	Right Atrium	heart
16	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
17	chr3:24412600-24414800	Weak transcription	Small Intestine	intestine
18	chr3:24412800-24414800	Weak transcription	Stomach Mucosa	stomach
19	chr3:24413400-24420200	Enhancers	Fetal Intestine Large	intestine
20	chr3:24413800-24415600	Enhancers	K562	blood
21	chr3:24414000-24418200	Enhancers	Fetal Intestine Small	intestine
22	chr3:24414200-24415000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr3:24414200-24415000	Enhancers	Aorta	Aorta
24	chr3:24414200-24415200	Flanking Active TSS	HepG2	liver
25	chr3:24414200-24415400	Enhancers	Psoas Muscle	Psoas
26	chr3:24414200-24415600	Enhancers	Colon Smooth Muscle	Colon
27	chr3:24414200-24415800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:24414400-24415000	Enhancers	Fetal Lung	lung
30	chr3:24414400-24415400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr3:24414400-24415600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:24414400-24418200	Enhancers	Rectal Mucosa Donor 31	rectum

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