Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12631689	0.89[AFR][1000 genomes]
rs13060704	0.89[AFR][1000 genomes]
rs13067183	0.89[AFR][1000 genomes]
rs4858937	0.89[AFR][1000 genomes]
rs4859002	0.89[AFR][1000 genomes]
rs6551292	0.90[AFR][1000 genomes]
rs6762453	0.91[AFR][1000 genomes]
rs71616896	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7427296	0.89[AFR][1000 genomes]
rs7427335	0.89[AFR][1000 genomes]
rs7428357	0.89[AFR][1000 genomes]
rs7431074	0.89[AFR][1000 genomes]
rs7615585	0.91[AFR][1000 genomes]
rs7620130	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7652528	0.87[AFR][1000 genomes]
rs9809661	0.89[AFR][1000 genomes]
rs9831230	0.89[AFR][1000 genomes]
rs9843550	0.89[AFR][1000 genomes]
rs9847322	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9847355	0.89[AFR][1000 genomes]
rs9848258	0.89[AFR][1000 genomes]
rs9849353	0.89[AFR][1000 genomes]
rs9868310	0.87[AFR][1000 genomes]
rs9868977	0.89[AFR][1000 genomes]
rs9876807	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7643699	C3orf38	Cis_1M	lymphoblastoid	RTeQTL
rs7643699	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88231600-88237400	Weak transcription	HepG2	liver

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