Variant report

Variant	rs7644197
Chromosome Location	chr3:133166403-133166404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133165936..133167701-chr3:133170915..133173583,2	MCF-7	breast:
2	chr3:133164640..133168534-chr3:133291750..133294077,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1610172	0.85[ASN][1000 genomes]
rs7645387	0.85[ASN][1000 genomes]
rs967651	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv522281	chr3:133137434-133167363	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1829199	chr3:133158065-133213047	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133158600-133166600	Weak transcription	Liver	Liver
2	chr3:133161000-133167000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:133161000-133168000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:133161000-133191000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:133161200-133166800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:133161400-133166800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:133161400-133166800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:133161600-133166800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:133161600-133167800	Weak transcription	Primary T cells from cord blood	blood
10	chr3:133162400-133170400	Enhancers	Fetal Thymus	thymus
11	chr3:133162600-133166800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:133162800-133166800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:133162800-133166800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:133162800-133166800	Weak transcription	Gastric	stomach
15	chr3:133162800-133166800	Enhancers	GM12878-XiMat	blood
16	chr3:133163200-133167400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:133163200-133167600	Weak transcription	Brain Substantia Nigra	brain
18	chr3:133163400-133166600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:133163400-133167600	Weak transcription	HepG2	liver
20	chr3:133163800-133166800	Weak transcription	Stomach Mucosa	stomach
21	chr3:133163800-133169200	Weak transcription	Pancreas	Pancrea
22	chr3:133164000-133167000	Weak transcription	A549	lung
23	chr3:133164200-133167400	Weak transcription	Placenta	Placenta
24	chr3:133164400-133166600	Weak transcription	Thymus	Thymus
25	chr3:133165400-133178600	Weak transcription	Aorta	Aorta
26	chr3:133165600-133167000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr3:133165600-133170400	Enhancers	Primary B cells from peripheral blood	blood
28	chr3:133166000-133168200	Enhancers	Brain Germinal Matrix	brain
29	chr3:133166000-133168200	Enhancers	Fetal Kidney	kidney
30	chr3:133166000-133169400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:133166200-133167200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:133166200-133169000	Enhancers	Primary B cells from cord blood	blood
33	chr3:133166200-133169200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr3:133166200-133169400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:133166400-133167800	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:133166400-133168200	Enhancers	Primary T helper cells fromperipheralblood	blood

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