Variant report

Variant	rs7644525
Chromosome Location	chr3:61096225-61096226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11918956	0.83[EUR][1000 genomes]
rs11925380	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11925426	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17064433	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2118812	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs41495354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes]
rs56260470	0.83[EUR][1000 genomes]
rs56366514	0.83[EUR][1000 genomes]
rs56379111	0.83[EUR][1000 genomes]
rs6774890	0.83[EUR][1000 genomes]
rs73839213	0.83[EUR][1000 genomes]
rs73839214	0.83[EUR][1000 genomes]
rs73839215	0.83[EUR][1000 genomes]
rs73839217	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7609788	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7610331	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7642143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7644694	1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7646887	1.00[CEU][hapmap]
rs9820046	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2756993	chr3:61064432-61119923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61087600-61103000	Weak transcription	Ovary	ovary
2	chr3:61095200-61103200	Weak transcription	Small Intestine	intestine
3	chr3:61095800-61097000	Enhancers	Thymus	Thymus
4	chr3:61095800-61098200	Enhancers	Fetal Thymus	thymus
5	chr3:61095800-61098600	Enhancers	Primary T cells from cord blood	blood
6	chr3:61096000-61096400	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr3:61096200-61097200	Enhancers	Liver	Liver
8	chr3:61096200-61100000	Enhancers	GM12878-XiMat	blood

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