Variant report

Variant	rs7644626
Chromosome Location	chr3:43672562-43672563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17409162	1.00[YRI][hapmap]
rs17473616	1.00[YRI][hapmap]
rs17474028	1.00[YRI][hapmap]
rs6780460	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7625580	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3445376	chr3:43672496-43672669	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43664200-43688400	Weak transcription	Aorta	Aorta
2	chr3:43664400-43673600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:43664600-43673600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:43671000-43672800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:43671200-43673600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:43671200-43673600	Weak transcription	HSMMtube	muscle
7	chr3:43671200-43673800	Weak transcription	NH-A	brain
8	chr3:43671200-43680200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:43671400-43673600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:43671400-43673600	Enhancers	A549	lung
11	chr3:43671600-43673400	Weak transcription	Osteobl	bone
12	chr3:43671600-43673600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:43671600-43673600	Weak transcription	NHDF-Ad	bronchial
14	chr3:43671600-43673600	Weak transcription	NHLF	lung
15	chr3:43671600-43673800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:43672000-43672800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:43672200-43680000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:43672400-43675400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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