Variant report

Variant	rs7644887
Chromosome Location	chr3:155921199-155921200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11915601	1.00[AMR][1000 genomes]
rs11915883	1.00[AMR][1000 genomes]
rs16826030	1.00[ASW][hapmap]
rs6776031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6809972	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7620003	1.00[AMR][1000 genomes]
rs7623197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155918200-155928400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:155919600-155926000	Weak transcription	Aorta	Aorta
3	chr3:155920200-155925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:155920200-155926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:155921000-155921400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:155921000-155922200	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links