Variant report

Variant	rs7645633
Chromosome Location	chr3:85018214-85018215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85011548..85014009-chr3:85014905..85018347,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12714616	0.81[EUR][1000 genomes]
rs12714617	0.81[EUR][1000 genomes]
rs13066623	0.82[EUR][1000 genomes]
rs13075873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082518	0.81[EUR][1000 genomes]
rs13092125	0.82[EUR][1000 genomes]
rs36032153	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768455	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9647393	0.82[EUR][1000 genomes]
rs9815258	0.82[EUR][1000 genomes]
rs9818659	0.82[EUR][1000 genomes]
rs9821807	0.82[EUR][1000 genomes]
rs9823454	0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs9828496	0.82[EUR][1000 genomes]
rs9833081	0.88[EUR][1000 genomes]
rs9836888	0.88[EUR][1000 genomes]
rs9849305	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9860513	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9871198	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs9881257	0.82[EUR][1000 genomes]
rs9883443	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381298	chr3:84689266-85030314	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001316	chr3:84773522-85071342	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877091	chr3:84876250-85069287	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv482371	chr3:84880813-85031486	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv471620	chr3:84880814-85031486	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1829788	chr3:84926769-85086403	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1010140	chr3:84997012-85034281	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3365261	chr3:85016662-85021560	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85011600-85018400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:85013400-85019200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:85014400-85020000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:85016800-85018400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr3:85016800-85018400	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr3:85016800-85019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:85017600-85019000	Weak transcription	Fetal Brain Male	brain
8	chr3:85017600-85019200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:85017600-85019800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:85017600-85020000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:85017600-85020200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:85017600-85021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:85017800-85018400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:85017800-85018400	Active TSS	Brain Angular Gyrus	brain
15	chr3:85017800-85018400	Enhancers	Fetal Brain Female	brain
16	chr3:85017800-85019800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:85018000-85018400	Active TSS	Brain Cingulate Gyrus	brain
18	chr3:85018000-85018400	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr3:85018000-85019000	Weak transcription	Fetal Lung	lung
20	chr3:85018000-85021000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:85018000-85027600	Weak transcription	Brain Substantia Nigra	brain
22	chr3:85018200-85018400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:85018200-85019000	Enhancers	Brain Anterior Caudate	brain
24	chr3:85018200-85019600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr3:85018200-85022600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:85018200-85029200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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