Variant report

Variant	rs764584
Chromosome Location	chr1:210520976-210520977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210518580..210522911-chr1:210544090..210547825,5	MCF-7	breast:
2	chr1:210519420..210522572-chr1:210544529..210548976,6	K562	blood:
3	chr1:210519673..210522333-chr1:210545339..210548861,4	K562	blood:
4	chr1:210520007..210522268-chr1:210544999..210547246,3	MCF-7	breast:
5	chr1:210511095..210513876-chr1:210520473..210521986,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10863821	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12072698	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12127761	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3765883	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845004	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4845005	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529812	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
2	esv3429173	chr1:210520707-210521026	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210503600-210546800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:210513000-210540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210516800-210534400	Weak transcription	Fetal Lung	lung
4	chr1:210517000-210531400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:210517000-210534400	Weak transcription	HSMM	muscle
6	chr1:210517200-210524400	Weak transcription	Lung	lung
7	chr1:210517200-210524600	Weak transcription	Ovary	ovary
8	chr1:210517200-210525400	Weak transcription	Thymus	Thymus
9	chr1:210517200-210534400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:210517200-210534400	Weak transcription	Brain Anterior Caudate	brain
11	chr1:210517200-210534600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:210517200-210535800	Weak transcription	Right Ventricle	heart
13	chr1:210517200-210536000	Weak transcription	Fetal Stomach	stomach
14	chr1:210517200-210536000	Weak transcription	Left Ventricle	heart
15	chr1:210517400-210525400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:210517400-210533200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:210517400-210534400	Weak transcription	Adipose Nuclei	Adipose
18	chr1:210517600-210522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:210517600-210536000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:210517800-210522200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:210518600-210534400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:210519800-210521000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:210519800-210521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:210520000-210521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:210520000-210521000	Enhancers	NH-A	brain
26	chr1:210520000-210521200	Enhancers	Osteobl	bone
27	chr1:210520600-210521000	Flanking Active TSS	Fetal Heart	heart
28	chr1:210520600-210521200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:210520800-210524000	Weak transcription	Aorta	Aorta
30	chr1:210520800-210531800	Weak transcription	HSMMtube	muscle

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