Variant report

Variant	rs7647432
Chromosome Location	chr3:87981935-87981936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11128011	0.88[AMR][1000 genomes]
rs12490415	0.84[AMR][1000 genomes]
rs13320429	0.84[AMR][1000 genomes]
rs1393916	0.87[AMR][1000 genomes]
rs1604697	0.87[AMR][1000 genomes]
rs1818163	0.86[AMR][1000 genomes]
rs1821027	0.84[AMR][1000 genomes]
rs1847305	0.88[AMR][1000 genomes]
rs1975095	0.85[AMR][1000 genomes]
rs1983075	0.87[AMR][1000 genomes]
rs2195714	0.86[AMR][1000 genomes]
rs2195715	0.86[AMR][1000 genomes]
rs4333109	0.87[AMR][1000 genomes]
rs57019520	0.86[AMR][1000 genomes]
rs60635211	0.86[AMR][1000 genomes]
rs6551257	0.87[AMR][1000 genomes]
rs6775200	0.88[AMR][1000 genomes]
rs6807414	0.87[AMR][1000 genomes]
rs6807548	0.87[AMR][1000 genomes]
rs7426476	0.83[AMR][1000 genomes]
rs7434013	0.84[AMR][1000 genomes]
rs7629536	0.87[AMR][1000 genomes]
rs7647245	0.87[AMR][1000 genomes]
rs923473	0.88[AMR][1000 genomes]
rs923474	0.85[AMR][1000 genomes]
rs9809386	0.85[AMR][1000 genomes]
rs9816966	0.87[AMR][1000 genomes]
rs9829833	0.88[AMR][1000 genomes]
rs9830274	0.88[AMR][1000 genomes]
rs9844893	0.85[AMR][1000 genomes]
rs9852305	0.87[AMR][1000 genomes]
rs9872577	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1001572	chr3:87942288-87983962	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1007981	chr3:87949316-88004036	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv527929	chr3:87949733-88003812	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87975200-87983200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:87975200-87983200	Weak transcription	K562	blood
3	chr3:87980200-87983000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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