Variant report

Variant	rs76475742
Chromosome Location	chr3:100522179-100522180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100520717..100523501-chr7:140980485..140982614,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796184	chr3:100507827-100522384	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv591170	chr3:100514481-100522220	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1795329	chr3:100514481-100522384	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1803695	chr3:100514481-100522384	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv591171	chr3:100516767-100522220	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv591172	chr3:100516767-100522384	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1798221	chr3:100518650-100536284	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3498592	chr3:100520937-100523510	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3462235	chr3:100521277-100522802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3462234	chr3:100521497-100522612	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3364992	chr3:100521508-100522608	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3498588	chr3:100521528-100522624	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv5408	chr3:100521542-100522642	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3498590	chr3:100521545-100522555	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462239	chr3:100521550-100522578	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462238	chr3:100521553-100522579	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3462236	chr3:100521565-100522531	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3498589	chr3:100521571-100522557	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3498591	chr3:100521573-100522563	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv822203	chr3:100521588-100522531	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3450290	chr3:100521591-100522527	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3462237	chr3:100521616-100522512	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv822204	chr3:100521623-100522466	Genic enhancers Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv822205	chr3:100521623-100522531	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3498587	chr3:100521626-100522510	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3462240	chr3:100521630-100522508	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3498593	chr3:100521630-100522508	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv11375	chr3:100521677-100522512	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv591173	chr3:100521734-100522271	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv591174	chr3:100521734-100522384	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1796614	chr3:100521734-100523359	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv591175	chr3:100521791-100522384	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:100502400-100530400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:100505200-100558200	Weak transcription	Ovary	ovary
4	chr3:100505200-100582800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:100506000-100548400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:100513600-100523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:100514200-100547600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:100514400-100529000	Weak transcription	HSMMtube	muscle
9	chr3:100515600-100522600	Weak transcription	Osteobl	bone
10	chr3:100516000-100523000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:100516000-100572200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:100517400-100523400	Weak transcription	HSMM	muscle
13	chr3:100517400-100594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:100518800-100543000	Weak transcription	Fetal Stomach	stomach
15	chr3:100519000-100523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:100519600-100523600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:100519600-100530600	Weak transcription	Left Ventricle	heart
18	chr3:100521600-100522800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:100522000-100522400	Weak transcription	NHDF-Ad	bronchial

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