Variant report

Variant	rs7647743
Chromosome Location	chr3:69360165-69360166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69211406..69213651-chr3:69358510..69360667,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10865648	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12492029	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12492475	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483895	0.91[ASN][1000 genomes]
rs17005615	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1872152	0.88[ASN][1000 genomes]
rs2314990	0.91[ASN][1000 genomes]
rs2314992	0.91[ASN][1000 genomes]
rs55728052	0.91[ASN][1000 genomes]
rs56119799	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549198	0.84[ASN][1000 genomes]
rs66686363	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67846536	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67940491	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627492	0.89[ASN][1000 genomes]
rs7649373	0.91[ASN][1000 genomes]
rs9833304	0.91[ASN][1000 genomes]
rs9867480	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
3	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
6	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
7	chr3:69355800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:69356000-69361600	Strong transcription	NHEK	skin
9	chr3:69356000-69373200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:69356200-69368800	Weak transcription	Fetal Heart	heart
11	chr3:69356200-69369800	Weak transcription	Fetal Lung	lung
12	chr3:69356400-69361800	Weak transcription	HSMMtube	muscle
13	chr3:69356400-69371000	Weak transcription	Placenta	Placenta
14	chr3:69356400-69372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:69356800-69361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:69356800-69362600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:69356800-69362800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:69356800-69362800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr3:69357000-69362600	Strong transcription	Dnd41	blood
20	chr3:69357200-69362600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:69357200-69362800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr3:69357600-69366400	Weak transcription	Brain Angular Gyrus	brain
23	chr3:69357800-69362200	Weak transcription	Brain Anterior Caudate	brain
24	chr3:69357800-69362800	Strong transcription	HUVEC	blood vessel
25	chr3:69357800-69370000	Weak transcription	Spleen	Spleen
26	chr3:69358200-69370000	Weak transcription	Fetal Thymus	thymus
27	chr3:69358600-69360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:69358600-69360200	Enhancers	Brain Substantia Nigra	brain
29	chr3:69358600-69369600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:69359000-69360400	Enhancers	Brain Hippocampus Middle	brain
31	chr3:69359000-69360800	Strong transcription	HSMM	muscle
32	chr3:69359200-69361200	Weak transcription	Lung	lung
33	chr3:69359200-69362800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:69359400-69361000	Weak transcription	HMEC	breast
35	chr3:69359400-69361200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr3:69359400-69362000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:69359400-69370000	Weak transcription	Thymus	Thymus
38	chr3:69359800-69363600	Weak transcription	Brain Cingulate Gyrus	brain

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