Variant report

Variant	rs7648359
Chromosome Location	chr3:134523608-134523609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11923284	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4955455	0.93[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs6793917	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134517200-134526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134517600-134526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:134518400-134526200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:134518400-134528400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:134518600-134528200	Weak transcription	Fetal Brain Female	brain
6	chr3:134518800-134524400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:134519000-134529000	Weak transcription	Fetal Brain Male	brain
8	chr3:134520400-134525600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:134522000-134524600	Enhancers	Fetal Muscle Leg	muscle
10	chr3:134522400-134527800	Enhancers	GM12878-XiMat	blood
11	chr3:134522600-134524600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:134523200-134523800	Enhancers	Fetal Intestine Large	intestine
13	chr3:134523400-134523800	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr3:134523400-134524000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:134523400-134524000	Enhancers	Spleen	Spleen
16	chr3:134523400-134524200	Enhancers	Stomach Mucosa	stomach
17	chr3:134523400-134524400	Enhancers	Fetal Intestine Small	intestine
18	chr3:134523400-134524600	Enhancers	Fetal Muscle Trunk	muscle
19	chr3:134523400-134524800	Enhancers	Psoas Muscle	Psoas
20	chr3:134523600-134523800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:134523600-134523800	Enhancers	Brain Hippocampus Middle	brain
22	chr3:134523600-134523800	Enhancers	Pancreas	Pancrea
23	chr3:134523600-134524600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:134523600-134527200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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