Variant report

Variant	rs7648469
Chromosome Location	chr3:100501854-100501855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100494124..100496299-chr3:100500365..100501965,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12489798	0.97[ASN][1000 genomes]
rs12632235	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13322026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842822	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16842839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7642942	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7652511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9290224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100471800-100502000	Weak transcription	Brain Anterior Caudate	brain
2	chr3:100475600-100520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:100478800-100502000	Weak transcription	Psoas Muscle	Psoas
4	chr3:100488600-100504600	Weak transcription	Adipose Nuclei	Adipose
5	chr3:100489800-100504800	Weak transcription	Left Ventricle	heart
6	chr3:100494800-100523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:100496200-100504200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:100496800-100511200	Weak transcription	Aorta	Aorta
9	chr3:100497200-100504400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:100498200-100502400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:100498200-100502800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:100498600-100503000	Enhancers	NHDF-Ad	bronchial
13	chr3:100499000-100504400	Weak transcription	Ovary	ovary
14	chr3:100500000-100502400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:100500000-100503000	Genic enhancers	Osteobl	bone
16	chr3:100500200-100502200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:100500200-100502200	Enhancers	NH-A	brain
18	chr3:100500200-100503200	Strong transcription	HSMMtube	muscle
19	chr3:100500400-100502200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:100500400-100502200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:100500400-100502400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:100500400-100502400	Enhancers	NHLF	lung
23	chr3:100500400-100503000	Genic enhancers	Fetal Muscle Leg	muscle
24	chr3:100500600-100502400	Enhancers	Fetal Lung	lung
25	chr3:100500800-100502200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:100501000-100502200	Enhancers	Fetal Muscle Trunk	muscle
27	chr3:100501000-100502400	Enhancers	Colon Smooth Muscle	Colon
28	chr3:100501000-100504000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:100501200-100502400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:100501200-100502400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:100501200-100503000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:100501200-100516600	Weak transcription	HSMM	muscle
33	chr3:100501400-100502600	Enhancers	Rectal Smooth Muscle	rectum
34	chr3:100501400-100502800	Enhancers	Fetal Stomach	stomach
35	chr3:100501400-100502800	Enhancers	Sigmoid Colon	Sigmoid Colon

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