Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1020614	0.91[EUR][1000 genomes]
rs1020615	0.91[EUR][1000 genomes]
rs1020616	0.90[EUR][1000 genomes]
rs12714565	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12714566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13061386	0.99[EUR][1000 genomes]
rs1452167	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1452179	0.91[EUR][1000 genomes]
rs1452180	0.91[EUR][1000 genomes]
rs1551232	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164273	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2198281	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28859986	0.87[EUR][1000 genomes]
rs28893195	0.84[EUR][1000 genomes]
rs398555	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67529822	0.99[EUR][1000 genomes]
rs67764414	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs700013	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9811230	0.99[EUR][1000 genomes]
rs9811656	0.80[EUR][1000 genomes]
rs9812521	0.87[EUR][1000 genomes]
rs9842201	0.80[EUR][1000 genomes]
rs9865924	0.98[EUR][1000 genomes]
rs9867218	0.91[EUR][1000 genomes]
rs9869072	0.81[EUR][1000 genomes]
rs9878614	0.87[EUR][1000 genomes]
rs9882209	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998408	chr3:83057096-83549271	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536609	chr3:83057096-83549271	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877071	chr3:83324183-83536528	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1002964	chr3:83478168-83516136	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83480000-83484600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:83483200-83485000	Enhancers	Dnd41	blood
3	chr3:83483600-83484800	Enhancers	Fetal Brain Female	brain
4	chr3:83483600-83485000	Enhancers	Fetal Brain Male	brain
5	chr3:83483800-83485200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:83484000-83484600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:83484000-83484800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:83484200-83484600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:83484200-83484600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:83484200-83484600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:83484200-83484800	Active TSS	A549	lung
12	chr3:83484200-83485200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:83484400-83484800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:83484400-83484800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:83484400-83484800	Enhancers	Ovary	ovary

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