Variant report

Variant	rs764890
Chromosome Location	chr7:139975581-139975582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139876776..139878486-chr7:139973785..139976029,2	K562	blood:
2	chr7:139975332..139977325-chr7:139988336..139989898,2	K562	blood:
3	chr7:139876001..139878497-chr7:139973324..139976029,5	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2429208	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2429219	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7790509	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2761371	chr7:139964350-139979655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv520097	chr7:139969051-139979843	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv519667	chr7:139969051-139992387	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139974800-139975600	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr7:139974800-139976000	Flanking Active TSS	K562	blood
3	chr7:139974800-139976200	Enhancers	Fetal Heart	heart
4	chr7:139974800-139977000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:139975000-139975600	Enhancers	Fetal Intestine Small	intestine
6	chr7:139975000-139975600	Active TSS	Ovary	ovary
7	chr7:139975000-139975600	Active TSS	Right Ventricle	heart
8	chr7:139975000-139975800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:139975000-139975800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:139975000-139975800	Enhancers	Brain Angular Gyrus	brain
11	chr7:139975000-139975800	Enhancers	Brain Hippocampus Middle	brain
12	chr7:139975000-139976000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:139975000-139976000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:139975000-139976200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:139975000-139976600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:139975000-139976600	Enhancers	Fetal Muscle Leg	muscle
17	chr7:139975200-139975600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:139975200-139975600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:139975200-139975600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr7:139975200-139975600	Active TSS	Right Atrium	heart
21	chr7:139975200-139975800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:139975200-139975800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:139975200-139975800	Enhancers	Brain Cingulate Gyrus	brain
24	chr7:139975200-139975800	Active TSS	Stomach Smooth Muscle	stomach
25	chr7:139975200-139975800	Bivalent/Poised TSS	Osteobl	bone
26	chr7:139975400-139975600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
27	chr7:139975400-139975800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:139975400-139975800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:139975400-139975800	Active TSS	Fetal Kidney	kidney

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