Variant report

Variant	rs764938
Chromosome Location	chr8:117813226-117813227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000264875	Chromatin interaction
ENSG00000164754	Chromatin interaction
ENSG00000147677	Chromatin interaction
ENSG00000147679	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12547063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12548564	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs12548586	0.86[ASN][1000 genomes]
rs16889071	1.00[LWK][hapmap]
rs28694617	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7825662	0.85[JPT][hapmap]
rs7833306	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7844973	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117782000-117814000	Weak transcription	Ovary	ovary
3	chr8:117809600-117814800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:117811600-117813800	Weak transcription	Right Ventricle	heart
5	chr8:117812400-117815800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr8:117812600-117813400	Enhancers	Psoas Muscle	Psoas
7	chr8:117812600-117815400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:117812600-117815600	Enhancers	Fetal Heart	heart
9	chr8:117812800-117814000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr8:117813000-117813400	Enhancers	Fetal Muscle Leg	muscle
11	chr8:117813000-117813400	Enhancers	Left Ventricle	heart
12	chr8:117813000-117813400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr8:117813000-117813800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:117813000-117816800	Enhancers	Placenta	Placenta
15	chr8:117813200-117813400	Enhancers	Fetal Lung	lung
16	chr8:117813200-117814000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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