Variant report

Variant	rs7649833
Chromosome Location	chr3:151274346-151274347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1448333	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4396876	0.88[CEU][hapmap]
rs6440767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440770	0.81[CHB][hapmap]
rs6776733	0.89[CEU][hapmap]
rs7622305	0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7623338	0.89[CEU][hapmap]
rs7629779	0.89[CEU][hapmap]
rs7638168	0.82[CHB][hapmap]
rs9831576	0.89[CEU][hapmap]
rs9834954	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9866939	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151266200-151274600	Weak transcription	Aorta	Aorta
2	chr3:151268800-151275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:151270600-151274800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:151270800-151274600	Weak transcription	Dnd41	blood
5	chr3:151270800-151275000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:151270800-151277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:151272000-151278400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:151272600-151274600	Enhancers	Fetal Lung	lung
9	chr3:151273200-151274600	Enhancers	Adipose Nuclei	Adipose
10	chr3:151273400-151274800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:151273600-151277600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:151273800-151275400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:151273800-151275600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:151274000-151274800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:151274000-151275600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:151274000-151275600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:151274000-151276600	Weak transcription	Fetal Stomach	stomach
18	chr3:151274200-151278200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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