Variant report

Variant	rs7649937
Chromosome Location	chr3:144110578-144110579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10804694	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1654861	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1654862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2569946	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2717371	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6440246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440251	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6779508	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6803907	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6804522	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs708475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728053	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612957	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7624341	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7639250	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs919835	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9879816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882421	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760759	chr3:144101799-144112161	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7649937	ASPRV1	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144110000-144111000	Enhancers	Brain Hippocampus Middle	brain
2	chr3:144110000-144112600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:144110200-144110600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:144110200-144110800	Enhancers	Brain Angular Gyrus	brain
5	chr3:144110200-144111000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:144110200-144111400	Enhancers	Brain Substantia Nigra	brain
7	chr3:144110200-144112600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:144110400-144110800	Enhancers	NHEK	skin
9	chr3:144110400-144111000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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