Variant report

Variant	rs7650267
Chromosome Location	chr3:43467895-43467896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43467502..43470080-chr3:43487634..43489298,2	K562	blood:
2	chr3:43459180..43460847-chr3:43465221..43468188,2	MCF-7	breast:
3	chr3:43460060..43463983-chr3:43465462..43468851,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12493769	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17473118	0.91[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56023784	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs906155	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7650267	SNRK	cis	cerebellum	SCAN
rs7650267	PTH1R	cis	parietal	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43432000-43477800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:43436400-43475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:43447800-43481200	Weak transcription	Lung	lung
5	chr3:43449000-43473000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:43449000-43474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:43451000-43473000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:43455600-43475400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43455800-43473000	Weak transcription	Fetal Stomach	stomach
11	chr3:43455800-43473600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:43455800-43477200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:43457000-43492800	Weak transcription	K562	blood
14	chr3:43459000-43476000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:43459800-43472800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:43460600-43473000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:43460600-43476000	Weak transcription	Spleen	Spleen
19	chr3:43460800-43473000	Weak transcription	Aorta	Aorta
20	chr3:43460800-43496400	Weak transcription	HSMM	muscle
21	chr3:43461000-43474800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:43461000-43475400	Weak transcription	Fetal Lung	lung
23	chr3:43461200-43476000	Weak transcription	HUVEC	blood vessel
24	chr3:43463000-43472600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:43465000-43475200	Weak transcription	HSMMtube	muscle
26	chr3:43465200-43475600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:43465200-43476000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:43465200-43477400	Weak transcription	NHLF	lung
29	chr3:43465600-43474800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:43465600-43476200	Weak transcription	NHDF-Ad	bronchial
31	chr3:43465800-43468200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:43465800-43473200	Weak transcription	Pancreas	Pancrea
33	chr3:43465800-43476600	Weak transcription	Ovary	ovary
34	chr3:43466000-43474600	Weak transcription	Fetal Intestine Large	intestine
35	chr3:43466400-43472800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:43466600-43472600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:43466600-43474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:43466600-43474800	Weak transcription	Right Ventricle	heart
39	chr3:43466600-43475600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:43466800-43468400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr3:43466800-43468600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:43466800-43475600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:43467000-43468000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr3:43467000-43468200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr3:43467000-43468600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:43467000-43468600	Enhancers	Fetal Heart	heart
48	chr3:43467000-43475200	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:43467200-43468000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr3:43467200-43469800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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