Variant report

Variant	rs7650599
Chromosome Location	chr3:110806973-110806974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1381837	1.00[CEU][hapmap]
rs1382072	1.00[CEU][hapmap]
rs56111816	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110794200-110809200	Weak transcription	Fetal Brain Male	brain
2	chr3:110794400-110813600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:110799000-110807000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:110799000-110807000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:110799800-110820600	Weak transcription	A549	lung
6	chr3:110800200-110812400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:110800200-110817200	Weak transcription	Gastric	stomach
8	chr3:110802000-110822600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:110803800-110807600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:110804000-110817200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:110804200-110814200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:110804600-110807200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:110804600-110807200	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:110804800-110811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:110805000-110807000	Weak transcription	Stomach Mucosa	stomach
16	chr3:110805000-110808400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:110805000-110833600	Weak transcription	NHDF-Ad	bronchial
18	chr3:110805200-110807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:110805400-110808400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:110805600-110810800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:110806600-110807000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:110806600-110807000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:110806600-110807000	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr3:110806600-110807000	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:110806600-110807200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr3:110806600-110807200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:110806600-110807200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:110806600-110807200	Enhancers	Fetal Lung	lung
29	chr3:110806600-110807200	Enhancers	Left Ventricle	heart
30	chr3:110806600-110807200	Enhancers	Pancreas	Pancrea
31	chr3:110806600-110807200	Enhancers	Psoas Muscle	Psoas
32	chr3:110806600-110807400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr3:110806600-110807400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr3:110806600-110807400	Enhancers	Fetal Heart	heart
35	chr3:110806600-110807600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:110806600-110809400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr3:110806800-110807000	Enhancers	Brain Cingulate Gyrus	brain
38	chr3:110806800-110807000	Enhancers	Fetal Intestine Small	intestine
39	chr3:110806800-110807200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:110806800-110807200	Enhancers	Liver	Liver
41	chr3:110806800-110807200	Enhancers	Brain Hippocampus Middle	brain
42	chr3:110806800-110807200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:110806800-110807200	Enhancers	Fetal Brain Female	brain
44	chr3:110806800-110807200	Enhancers	Fetal Muscle Leg	muscle
45	chr3:110806800-110807200	Enhancers	Ovary	ovary
46	chr3:110806800-110807200	Enhancers	Right Atrium	heart
47	chr3:110806800-110807200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:110806800-110807200	Enhancers	Small Intestine	intestine
49	chr3:110806800-110807200	Enhancers	HepG2	liver
50	chr3:110806800-110807400	Enhancers	Adipose Nuclei	Adipose

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