Variant report

Variant	rs7650843
Chromosome Location	chr3:112490637-112490638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112358170..112360590-chr3:112489187..112490945,2	MCF-7	breast:
2	chr3:112483531..112486367-chr3:112489660..112491750,2	K562	blood:
3	chr3:112490402..112493050-chr3:112499007..112501789,2	K562	blood:
4	chr3:112488625..112490869-chr3:112493684..112496164,2	MCF-7	breast:
5	chr3:112490402..112493250-chr3:112496311..112501759,4	K562	blood:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12633641	0.88[AMR][1000 genomes]
rs12634296	0.88[AMR][1000 genomes]
rs16860025	0.88[AMR][1000 genomes]
rs16860034	0.88[AMR][1000 genomes]
rs2036938	0.91[AMR][1000 genomes]
rs2087286	0.88[AMR][1000 genomes]
rs4682425	0.88[AMR][1000 genomes]
rs4682427	0.88[AMR][1000 genomes]
rs4682428	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112485800-112494400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:112486600-112491200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:112486600-112492800	Weak transcription	Spleen	Spleen
4	chr3:112486600-112492800	Weak transcription	GM12878-XiMat	blood
5	chr3:112486600-112494000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:112486800-112490800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:112487400-112492200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:112488000-112501200	Enhancers	NHLF	lung
9	chr3:112489200-112492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:112489400-112491200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:112489400-112491400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:112489400-112492200	Weak transcription	HMEC	breast
13	chr3:112489400-112492600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:112489400-112492800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:112489400-112492800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:112489400-112492800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:112489400-112493000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:112489400-112493000	Weak transcription	HUVEC	blood vessel
19	chr3:112489600-112491000	Weak transcription	Stomach Mucosa	stomach
20	chr3:112489600-112491400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:112489600-112493000	Weak transcription	NH-A	brain
22	chr3:112490000-112491600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:112490000-112492200	Weak transcription	NHEK	skin
24	chr3:112490000-112495200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:112490000-112495200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:112490200-112491200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:112490200-112491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:112490200-112491200	Weak transcription	Esophagus	oesophagus
29	chr3:112490200-112491200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr3:112490200-112491200	Weak transcription	A549	lung
31	chr3:112490200-112491200	Weak transcription	NHDF-Ad	bronchial
32	chr3:112490200-112492200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:112490200-112492200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:112490200-112492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:112490200-112492800	Weak transcription	Osteobl	bone
36	chr3:112490200-112494800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:112490200-112495600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:112490200-112499800	Weak transcription	K562	blood

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