Variant report

Variant	rs7651207
Chromosome Location	chr3:112541472-112541473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112536850..112540254-chr3:112540351..112542101,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTPBP8-2	chr3:112539681-112542106	NONHSAT091199

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10804504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10804506	0.93[AFR][1000 genomes]
rs10934188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1114404	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs12489734	0.84[CEU][hapmap]
rs12695270	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13094280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs13100559	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997281	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs28782232	0.98[AFR][1000 genomes]
rs6763318	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6765575	0.98[AFR][1000 genomes]
rs6787688	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs6806976	0.98[AFR][1000 genomes]
rs6808135	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7609699	0.86[AFR][1000 genomes]
rs9288958	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9288959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9288964	0.93[AFR][1000 genomes]
rs9809444	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9810246	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9814008	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9823692	0.91[AFR][1000 genomes]
rs9826834	0.93[AFR][1000 genomes]
rs9834599	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9839592	0.90[AFR][1000 genomes]
rs9871326	0.84[AFR][1000 genomes]
rs9871605	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs9879005	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112533200-112543200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:112537800-112543200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr3:112540000-112542400	Flanking Active TSS	A549	lung
4	chr3:112540200-112541600	Weak transcription	Fetal Kidney	kidney
5	chr3:112540400-112542200	Enhancers	Hela-S3	cervix
6	chr3:112540600-112541600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:112540800-112541600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:112541000-112541800	Enhancers	NHLF	lung
9	chr3:112541000-112542600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:112541200-112542400	Enhancers	Liver	Liver
11	chr3:112541400-112543000	Enhancers	Primary monocytes fromperipheralblood	blood

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