The 2.0 version of rSNPBase
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Variant report
Variant
rs7651545
Chromosome Location
chr3:99311914-99311915
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:3)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
SPI1
chr3:99311845-99311957
K562
blood:
n/a
n/a
2
SPI1
chr3:99311834-99311955
K562
blood:
n/a
n/a
3
SPI1
chr3:99311784-99311967
GM12878
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000244464
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs7621540
0.84[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv530026
chr3:98837320-99340537
ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
2
esv3422853
chr3:99208019-99342748
Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links