Variant report

Variant	rs765190
Chromosome Location	chr2:40781367-40781368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12989012	0.91[ASN][1000 genomes]
rs12992540	0.90[ASN][1000 genomes]
rs12992598	0.89[ASN][1000 genomes]
rs34106653	0.92[ASN][1000 genomes]
rs34466654	0.80[ASN][1000 genomes]
rs34875537	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35422863	0.93[ASN][1000 genomes]
rs35951633	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57007180	0.83[ASN][1000 genomes]
rs61356646	0.92[ASN][1000 genomes]
rs61702121	0.92[ASN][1000 genomes]
rs62149456	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62149458	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67526252	0.81[ASN][1000 genomes]
rs71441111	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71441112	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7561779	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7573804	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7576549	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40778400-40783000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:40778400-40783600	Weak transcription	Right Atrium	heart
3	chr2:40779800-40785000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:40780600-40782000	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:40780600-40782000	Flanking Active TSS	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links