Variant report

Variant	rs7652016
Chromosome Location	chr3:109952011-109952012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10934019	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10934020	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10934021	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12053963	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350857	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16856451	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16856454	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55738349	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59416282	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73851404	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73851405	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73851406	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73851407	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73851408	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73851411	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7649126	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109950000-109954200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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