Variant report

Variant	rs7652504
Chromosome Location	chr3:112649613-112649614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1016348	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934190	0.82[ASN][1000 genomes]
rs10934192	0.83[ASN][1000 genomes]
rs10934193	0.83[ASN][1000 genomes]
rs12497951	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13326243	0.83[ASN][1000 genomes]
rs1392786	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1466872	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500879	0.81[ASN][1000 genomes]
rs1844084	0.82[ASN][1000 genomes]
rs1971986	0.83[ASN][1000 genomes]
rs2101440	0.85[ASN][1000 genomes]
rs2171509	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399436	0.84[ASN][1000 genomes]
rs2399443	0.83[ASN][1000 genomes]
rs4103791	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4234417	0.83[ASN][1000 genomes]
rs4682120	0.83[ASN][1000 genomes]
rs4682125	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682440	0.83[ASN][1000 genomes]
rs4682441	0.83[ASN][1000 genomes]
rs4682444	0.83[ASN][1000 genomes]
rs4682447	0.81[ASN][1000 genomes]
rs6438118	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438119	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438120	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438122	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766388	0.83[ASN][1000 genomes]
rs6769091	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6772799	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784838	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6791158	0.83[ASN][1000 genomes]
rs6791672	0.85[ASN][1000 genomes]
rs6808249	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355890	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611690	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615462	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7622812	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622814	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632218	0.82[ASN][1000 genomes]
rs7646849	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7652536	0.84[ASN][1000 genomes]
rs9815606	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819079	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9823363	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9826308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833991	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9834353	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9834840	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9847365	0.83[ASN][1000 genomes]
rs9854885	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9864295	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865242	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868053	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868839	0.85[ASN][1000 genomes]
rs9870335	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9870568	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871985	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875551	0.82[ASN][1000 genomes]
rs9877631	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9879005	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9879149	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9883255	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112633400-112650800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:112635400-112650600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:112635600-112650400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:112638800-112650400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:112639400-112650400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:112640200-112650800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:112642400-112650400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:112642600-112650600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:112645000-112650000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr3:112645200-112650600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:112645600-112650800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:112646000-112650000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:112646000-112650800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:112647800-112651400	Weak transcription	Esophagus	oesophagus
15	chr3:112648000-112650400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr3:112648200-112650800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:112648200-112650800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:112648400-112650600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:112649200-112650200	Strong transcription	Primary T cells from cord blood	blood
20	chr3:112649600-112652600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links