Variant report

Variant	rs7654460
Chromosome Location	chr4:100507891-100507892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10516448	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10516450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17529530	1.00[AMR][1000 genomes]
rs17532601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17532992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588761	1.00[AMR][1000 genomes]
rs17599091	1.00[EUR][1000 genomes]
rs17600332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1969098	1.00[AMR][1000 genomes]
rs1982248	1.00[AMR][1000 genomes]
rs2218295	1.00[AMR][1000 genomes]
rs41275713	1.00[EUR][1000 genomes]
rs41275721	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100505600-100508800	Weak transcription	HepG2	liver
2	chr4:100506200-100509600	Enhancers	Fetal Intestine Large	intestine
3	chr4:100506200-100509800	Enhancers	Fetal Intestine Small	intestine
4	chr4:100506200-100516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:100506800-100510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:100507200-100509000	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:100507200-100509400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:100507400-100509400	Enhancers	Hela-S3	cervix
9	chr4:100507800-100508800	Enhancers	Liver	Liver
10	chr4:100507800-100510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:100507800-100533800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links