Variant report

Variant	rs7655536
Chromosome Location	chr4:77176768-77176769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77165064..77167493-chr4:77174521..77177235,2	K562	blood:
2	chr4:77171208..77175531-chr4:77176138..77180024,6	K562	blood:

Variant related genes	Relation type
ENSG00000272414	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000118804	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12651582	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs7666265	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7671407	0.83[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv516357	chr4:77167242-77178379	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2421530	chr4:77167242-77178676	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7655536	CCNI	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173400-77177200	Weak transcription	Aorta	Aorta
2	chr4:77173400-77177400	Weak transcription	Spleen	Spleen
3	chr4:77173400-77177800	Weak transcription	HepG2	liver
4	chr4:77173600-77178000	Weak transcription	Liver	Liver
5	chr4:77173600-77178000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
7	chr4:77173800-77185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:77173800-77185400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:77173800-77185400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:77173800-77186000	Weak transcription	Pancreas	Pancrea
11	chr4:77173800-77191400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
13	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:77174000-77177600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:77174000-77185600	Weak transcription	Brain Angular Gyrus	brain
16	chr4:77174200-77178400	Weak transcription	Brain Substantia Nigra	brain
17	chr4:77174200-77186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:77174400-77178400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:77176200-77186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:77176600-77177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:77176600-77177000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:77176600-77177000	Enhancers	Fetal Thymus	thymus
23	chr4:77176600-77177000	Enhancers	K562	blood
24	chr4:77176600-77177400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr4:77176600-77178200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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