Variant report

Variant	rs76558049
Chromosome Location	chr4:26861756-26861757
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:96)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:96 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26861478-26862812	HCT-116	colon:	n/a	n/a
2	MYC	chr4:26861744-26863421	K562	blood:	n/a	n/a
3	POLR2A	chr4:26861623-26862751	GM12891	blood:	n/a	n/a
4	NR2F2	chr4:26861749-26862442	K562	blood:	n/a	n/a
5	MXI1	chr4:26861480-26863616	HepG2	liver:	n/a	n/a
6	MYBL2	chr4:26861723-26862395	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:26861723-26862684	HCT-116	colon:	n/a	n/a
8	POLR2A	chr4:26861729-26862627	HepG2	liver:	n/a	n/a
9	CBX3	chr4:26861687-26862574	K562	blood:	n/a	n/a
10	TBP	chr4:26861551-26863177	K562	blood:	n/a	n/a
11	CTCF	chr4:26861720-26861870	AG04450	lung:	n/a	n/a
12	CHD2	chr4:26861646-26862608	GM12878	blood:	n/a	n/a
13	RCOR1	chr4:26861672-26862577	HepG2	liver:	n/a	n/a
14	JUND	chr4:26861713-26862227	HepG2	liver:	n/a	n/a
15	NFATC1	chr4:26861716-26862316	GM12878	blood:	n/a	n/a
16	POLR2A	chr4:26861633-26862929	ECC-1	luminal epithelium:	n/a	n/a
17	CHD1	chr4:26861257-26864940	IMR90	lung:	n/a	n/a
18	POLR2A	chr4:26861417-26862724	HCT-116	colon:	n/a	n/a
19	MAX	chr4:26861719-26862043	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr4:26861700-26862691	K562	blood:	n/a	n/a
21	TBP	chr4:26861705-26862579	Hela-S3	cervix:	n/a	n/a
22	SIN3A	chr4:26861486-26863615	H1-hESC	embryonic stem cell:	n/a	n/a
23	FOXA2	chr4:26861744-26862107	HepG2	liver:	n/a	n/a
24	POLR2A	chr4:26861754-26862853	PFSK-1	brain:	n/a	n/a
25	BACH1	chr4:26861654-26862335	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr4:26861753-26862644	GM12878	blood:	n/a	n/a
27	MAX	chr4:26861703-26862559	SK-N-SH	brain:	n/a	n/a
28	MTA3	chr4:26861706-26862373	GM12878	blood:	n/a	n/a
29	RCOR1	chr4:26861624-26863701	K562	blood:	n/a	n/a
30	CTCF	chr4:26861620-26861770	AG04449	skin:	n/a	n/a
31	ARID3A	chr4:26861560-26862531	HepG2	liver:	n/a	n/a
32	RAD21	chr4:26861678-26862222	HepG2	liver:	n/a	n/a
33	BHLHE40	chr4:26861695-26862548	GM12878	blood:	n/a	n/a
34	MYC	chr4:26861611-26863313	K562	blood:	n/a	n/a
35	MYC	chr4:26861703-26862528	MCF10A-Er-Src	breast:	n/a	n/a
36	POLR2A	chr4:26861741-26862637	PANC-1	pancreas:	n/a	n/a
37	POLR2A	chr4:26861462-26862868	HepG2	liver:	n/a	n/a
38	POLR2A	chr4:26861628-26862699	K562	blood:	n/a	n/a
39	POLR2A	chr4:26861436-26862764	MCF10A-Er-Src	breast:	n/a	n/a
40	MAX	chr4:26861700-26863243	K562	blood:	n/a	n/a
41	POLR2A	chr4:26861704-26862833	MCF10A-Er-Src	breast:	n/a	n/a
42	POLR2A	chr4:26861725-26862688	U87	brain:	n/a	n/a
43	TEAD4	chr4:26861708-26862684	ECC-1	luminal epithelium:	n/a	n/a
44	RELA	chr4:26861714-26862540	GM15510	blood:	n/a	n/a
45	NFATC1	chr4:26861694-26862447	GM12878	blood:	n/a	n/a
46	POLR2A	chr4:26861622-26863424	GM18951	blood:	n/a	n/a
47	CTCF	chr4:26861660-26863595	SK-N-SH	brain:	n/a	chr4:26863501-26863508
48	POLR2A	chr4:26861708-26862631	SK-N-MC	brain:	n/a	n/a
49	MAX	chr4:26861756-26863379	K562	blood:	n/a	n/a
50	POLR2A	chr4:26861499-26862859	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
STIM2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3403917	chr4:26861379-26864227	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26858600-26862800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:26859400-26862200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:26859600-26861800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr4:26859600-26861800	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr4:26859600-26861800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr4:26859600-26862000	Flanking Active TSS	Fetal Thymus	thymus
7	chr4:26859800-26861800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:26859800-26861800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr4:26859800-26861800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr4:26859800-26861800	Enhancers	Spleen	Spleen
11	chr4:26859800-26862000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:26859800-26862000	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr4:26859800-26862000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr4:26859800-26862000	Flanking Active TSS	Dnd41	blood
15	chr4:26859800-26862000	Flanking Active TSS	Hela-S3	cervix
16	chr4:26860000-26861800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:26860000-26861800	Weak transcription	Ovary	ovary
18	chr4:26860200-26861800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:26860200-26861800	Enhancers	Small Intestine	intestine
20	chr4:26860200-26861800	Flanking Active TSS	NHEK	skin
21	chr4:26860200-26864600	Active TSS	Fetal Muscle Trunk	muscle
22	chr4:26860400-26861800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:26860400-26861800	Weak transcription	Lung	lung
24	chr4:26860600-26861800	Flanking Active TSS	Thymus	Thymus
25	chr4:26860600-26862000	Flanking Active TSS	GM12878-XiMat	blood
26	chr4:26860600-26862000	Flanking Active TSS	HMEC	breast
27	chr4:26860600-26862000	Flanking Active TSS	K562	blood
28	chr4:26860800-26861800	Flanking Active TSS	Stomach Mucosa	stomach
29	chr4:26861000-26861800	Flanking Active TSS	Fetal Lung	lung
30	chr4:26861000-26862000	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr4:26861000-26862200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:26861200-26861800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:26861200-26862000	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr4:26861200-26862000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:26861200-26862000	Flanking Active TSS	Liver	Liver
36	chr4:26861200-26862000	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr4:26861200-26862200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr4:26861200-26864000	Active TSS	Fetal Kidney	kidney
39	chr4:26861400-26861800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
40	chr4:26861400-26861800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:26861400-26861800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr4:26861400-26861800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:26861400-26861800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr4:26861400-26861800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr4:26861400-26861800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:26861400-26861800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:26861400-26861800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:26861400-26861800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:26861400-26861800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr4:26861400-26861800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links