Variant report

Variant	rs7656670
Chromosome Location	chr4:175299497-175299498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10446854	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934405	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11939414	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13101256	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111067	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13112711	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13125731	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151156	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34066344	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34274380	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34369193	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34698083	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34765808	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35377027	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35473266	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35567270	0.88[AMR][1000 genomes]
rs4280712	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4293767	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4306937	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4408938	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4408939	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4428259	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447835	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4452408	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4458430	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4469047	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695777	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4695926	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4695927	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4695928	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4695930	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695931	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56041548	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58895800	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58956072	1.00[ASN][1000 genomes]
rs67509565	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6812756	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6814901	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6817902	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6831848	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6855058	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6855451	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72702274	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72702283	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175291600-175302000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175297000-175304400	Weak transcription	K562	blood
3	chr4:175297200-175301400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:175297200-175301400	Weak transcription	Placenta	Placenta
5	chr4:175297400-175304800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr4:175299000-175302000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:175299000-175302600	Weak transcription	Stomach Mucosa	stomach
8	chr4:175299000-175303200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:175299200-175300000	Enhancers	A549	lung
10	chr4:175299200-175300400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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