Variant report

Variant	rs7656821
Chromosome Location	chr4:74346234-74346235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:74346227-74346277	Jurkat	blood:	n/a
2	chr4:74346227-74346277	NH-A	brain:	n/a
3	chr4:74346227-74346277	K562	blood:	n/a
4	chr4:74346227-74346277	PrEC	prostate:	n/a
5	chr4:74346227-74346277	HRCEpiC	kidney:	n/a
6	chr4:74346227-74346277	HEK293	kidney:	embryo
7	chr4:74346227-74346277	NHDF-neo	bronchial:	n/a
8	chr4:74346227-74346277	NT2-D1	testis:	n/a
9	chr4:74346227-74346277	HCPEpiC	choroid plexus:	n/a
10	chr4:74346227-74346277	GM12891	blood:	n/a
11	chr4:74346227-74346277	LNCaP	prostate:	n/a
12	chr4:74346227-74346277	HRE	kidney:	n/a
13	chr4:74346227-74346277	AG09319	gingival:	n/a
14	chr4:74346227-74346277	ProgFib	skin:	n/a
15	chr4:74346227-74346277	HepG2	liver:	n/a
16	chr4:74346227-74346277	RPTEC	kidney:	n/a
17	chr4:74346227-74346277	BE2_C	brain:	n/a
18	chr4:74346227-74346277	AG04450	lung:	fetal
19	chr4:74346227-74346277	HL-60	blood:	n/a
20	chr4:74346227-74346277	NHBE	bronchial:	n/a
21	chr4:74346227-74346277	SK-N-SH_RA	brain:	n/a
22	chr4:74346227-74346277	PFSK-1	brain:	n/a
23	chr4:74346227-74346277	U87	brain:	n/a
24	chr4:74346227-74346277	ECC-1	luminal epithelium:	n/a
25	chr4:74346227-74346277	HPAEpiC	pulmonary alveolar:	n/a
26	chr4:74346227-74346277	MCF-7	breast:	n/a
27	chr4:74346227-74346277	GM12878	blood:	n/a
28	chr4:74346227-74346277	CMK	blood:	n/a
29	chr4:74346227-74346277	Caco-2	colon:	n/a
30	chr4:74346227-74346277	HRPEpiC	eye:	n/a
31	chr4:74346227-74346277	BJ	skin:	n/a
32	chr4:74346227-74346277	ovcar-3	ovarian:	n/a
33	chr4:74346227-74346277	Hela-S3	cervix:	n/a
34	chr4:74346227-74346277	HUVEC	blood vessel:	n/a
35	chr4:74346227-74346277	GM19239	blood:	n/a
36	chr4:74346227-74346277	A549	lung:	n/a
37	chr4:74346227-74346277	PANC-1	pancreas:	n/a
38	chr4:74346227-74346277	AG10803	skin:	n/a
39	chr4:74346227-74346277	IMR90	lung:	fetal
40	chr4:74346227-74346277	AoSMC	blood vessel:	n/a
41	chr4:74346227-74346277	SK-N-SH	brain:	n/a
42	chr4:74346227-74346277	GM12892	blood:	n/a
43	chr4:74346227-74346277	AG04449	skin:	fetal
44	chr4:74346227-74346277	NB4	blood:	n/a
45	chr4:74346227-74346277	SAEC	small airway:	n/a
46	chr4:74346227-74346277	HCM	heart:	n/a
47	chr4:74346227-74346277	HEEpiC	esophagus:	n/a
48	chr4:74346227-74346277	AG09309	skin:	n/a
49	chr4:74346227-74346277	HIPEpiC	eye:	n/a
50	chr4:74346227-74346277	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
AFM	CpG island

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008051	0.83[AMR][1000 genomes]
rs10009370	0.83[AMR][1000 genomes]
rs10938076	0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4301076	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4502652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4619861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694163	1.00[CHB][hapmap]
rs4694619	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694620	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6854921	0.91[AMR][1000 genomes]
rs6858188	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7662691	0.83[AMR][1000 genomes]
rs7668148	0.86[YRI][hapmap];0.91[AMR][1000 genomes]
rs7674863	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74344200-74346400	Enhancers	Liver	Liver
2	chr4:74346000-74348600	Enhancers	HepG2	liver
3	chr4:74346200-74346600	Enhancers	Pancreas	Pancrea
4	chr4:74346200-74347200	Enhancers	Fetal Intestine Large	intestine

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