Variant report
| Variant | rs7656854 |
|---|---|
| Chromosome Location | chr4:167055835-167055836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:167055604..167058496-chr4:167332499..167335064,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1039177 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1497942 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17047335 | 1.00[EUR][1000 genomes] |
| rs28783107 | 1.00[EUR][1000 genomes] |
| rs28785302 | 1.00[EUR][1000 genomes] |
| rs28793993 | 1.00[EUR][1000 genomes] |
| rs28796060 | 1.00[EUR][1000 genomes] |
| rs28799312 | 1.00[EUR][1000 genomes] |
| rs28820406 | 1.00[EUR][1000 genomes] |
| rs28897143 | 1.00[EUR][1000 genomes] |
| rs60586039 | 1.00[AMR][1000 genomes] |
| rs61042258 | 1.00[EUR][1000 genomes] |
| rs72978372 | 1.00[AMR][1000 genomes] |
| rs72978380 | 1.00[AMR][1000 genomes] |
| rs72978383 | 1.00[AMR][1000 genomes] |
| rs72978389 | 1.00[AMR][1000 genomes] |
| rs7654769 | 1.00[AMR][1000 genomes] |
| rs7657040 | 1.00[EUR][1000 genomes] |
| rs7657372 | 1.00[EUR][1000 genomes] |
| rs7677373 | 1.00[EUR][1000 genomes] |
| rs7677686 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv821638 | chr4:166837633-167262625 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv830142 | chr4:166935555-167095922 | Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034421 | chr4:166961339-167893289 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv537339 | chr4:166961339-167893289 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:167050400-167064000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
