Variant report

Variant	rs7657317
Chromosome Location	chr4:69865396-69865397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:69865223-69865990	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000250277	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10000481	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10004381	1.00[EUR][1000 genomes]
rs10005280	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10014997	1.00[EUR][1000 genomes]
rs10015332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10018123	1.00[EUR][1000 genomes]
rs10030582	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10030703	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10903222	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1117530	1.00[EUR][1000 genomes]
rs1117531	1.00[EUR][1000 genomes]
rs11728297	0.97[ASN][1000 genomes]
rs1303726	1.00[EUR][1000 genomes]
rs13113179	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13148459	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13148751	1.00[ASN][1000 genomes]
rs1379814	1.00[EUR][1000 genomes]
rs1379815	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458239	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1598901	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1902924	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2018001	0.99[ASN][1000 genomes]
rs2125306	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2331566	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2331575	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2331576	1.00[EUR][1000 genomes]
rs2877423	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828503	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3966087	1.00[EUR][1000 genomes]
rs4391113	1.00[ASN][1000 genomes]
rs4419538	0.99[ASN][1000 genomes]
rs4532300	1.00[ASN][1000 genomes]
rs4643882	0.99[ASN][1000 genomes]
rs4694492	0.91[ASN][1000 genomes]
rs6812386	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814321	1.00[EUR][1000 genomes]
rs6818594	0.97[ASN][1000 genomes]
rs6851476	0.97[ASN][1000 genomes]
rs6858371	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7659264	0.94[ASN][1000 genomes]
rs7659867	0.97[ASN][1000 genomes]
rs7664636	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7672933	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7678708	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7688541	1.00[EUR][1000 genomes]
rs9329038	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv967758	chr4:69780530-69870183	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv829962	chr4:69786869-69910283	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv2757064	chr4:69863174-69901607	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links