Variant report

Variant	rs7659855
Chromosome Location	chr4:57861046-57861047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57860298..57862762-chr4:57864153..57866131,2	K562	blood:
2	chr4:57854152..57858062-chr4:57860294..57862898,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002269	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018580	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10018619	0.89[EUR][1000 genomes]
rs10033214	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10034163	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11930475	0.96[EUR][1000 genomes]
rs11936394	0.94[AFR][1000 genomes]
rs11940411	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11947717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13125046	0.87[AMR][1000 genomes]
rs13133792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13145285	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1568260	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17087291	0.83[AFR][1000 genomes]
rs17087332	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17087382	0.96[EUR][1000 genomes]
rs17181222	0.87[EUR][1000 genomes]
rs34278765	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34601747	1.00[AFR][1000 genomes]
rs34749389	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35437996	0.89[AFR][1000 genomes]
rs35706166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71601666	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71601672	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7440152	0.96[EUR][1000 genomes]
rs7684271	0.96[EUR][1000 genomes]
rs9991234	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv964049	chr4:57858281-57871268	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57846000-57881000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:57846200-57861600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:57846200-57861800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:57846600-57861200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:57846800-57900000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:57847000-57861600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:57848000-57861400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:57848400-57875200	Weak transcription	Stomach Mucosa	stomach
9	chr4:57848600-57900000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr4:57849000-57900000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:57849200-57869000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr4:57849200-57886200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:57849600-57884600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:57849800-57861400	Weak transcription	Psoas Muscle	Psoas
15	chr4:57850600-57870200	Strong transcription	GM12878-XiMat	blood
16	chr4:57850600-57899400	Strong transcription	Fetal Thymus	thymus
17	chr4:57850800-57899400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:57851000-57861200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:57851000-57899200	Strong transcription	Primary T cells from cord blood	blood
20	chr4:57851000-57899400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr4:57851200-57897200	Strong transcription	Fetal Intestine Large	intestine
22	chr4:57851400-57894800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:57851600-57861400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:57851600-57861400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:57851600-57864400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr4:57851600-57899400	Strong transcription	Placenta	Placenta
27	chr4:57851800-57861200	Strong transcription	HUVEC	blood vessel
28	chr4:57851800-57861400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:57851800-57861400	Strong transcription	Adipose Nuclei	Adipose
30	chr4:57851800-57863400	Strong transcription	Primary hematopoietic stem cells	blood
31	chr4:57851800-57868600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:57851800-57899400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:57851800-57899400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:57851800-57899400	Strong transcription	Liver	Liver
35	chr4:57851800-57899600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:57852000-57892200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:57852000-57894800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:57852000-57898200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr4:57852200-57899000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:57852200-57899400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:57852600-57861200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:57852600-57899400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:57854000-57861400	Weak transcription	Brain Angular Gyrus	brain
44	chr4:57854400-57861400	Weak transcription	Spleen	Spleen
45	chr4:57854600-57861400	Weak transcription	Fetal Lung	lung
46	chr4:57855400-57861400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr4:57856000-57861400	Weak transcription	Gastric	stomach
48	chr4:57856000-57861400	Weak transcription	Pancreas	Pancrea
49	chr4:57856000-57861600	Weak transcription	Ovary	ovary
50	chr4:57856000-57868400	Strong transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links