Variant report

Variant	rs7660076
Chromosome Location	chr4:55269396-55269397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10434430	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11724169	0.89[ASN][1000 genomes]
rs12508075	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1396066	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1507970	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17693493	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17749557	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1966783	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56081664	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71597875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7660758	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7663358	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv4344	chr4:55260607-55305235	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55267200-55270800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:55267600-55275200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:55268000-55269400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:55268800-55269600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55269000-55269400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:55269000-55269400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:55269000-55269400	Active TSS	Brain Cingulate Gyrus	brain
8	chr4:55269000-55269400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr4:55269200-55269400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:55269200-55269400	Enhancers	Adipose Nuclei	Adipose
11	chr4:55269200-55269400	Enhancers	Ovary	ovary
12	chr4:55269200-55269400	Enhancers	Right Atrium	heart
13	chr4:55269200-55269400	Bivalent Enhancer	K562	blood
14	chr4:55269200-55269600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:55269200-55269600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:55269200-55269600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:55269200-55269600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:55269200-55269600	Enhancers	Brain Angular Gyrus	brain
19	chr4:55269200-55269600	Active TSS	Brain Anterior Caudate	brain
20	chr4:55269200-55269600	Flanking Active TSS	Brain Hippocampus Middle	brain

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