Variant report

Variant	rs7662032
Chromosome Location	chr4:15635414-15635415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10008376	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10008975	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10214	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11728084	0.89[EUR][1000 genomes]
rs12499412	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500587	0.89[EUR][1000 genomes]
rs12500770	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512883	0.87[EUR][1000 genomes]
rs12644655	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651550	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13110674	0.92[EUR][1000 genomes]
rs13120905	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13129739	0.86[EUR][1000 genomes]
rs13142069	0.81[AFR][1000 genomes]
rs13147590	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1789	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35414597	0.87[EUR][1000 genomes]
rs4235379	0.94[EUR][1000 genomes]
rs4270584	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4333182	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4453929	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4470622	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524378	0.91[EUR][1000 genomes]
rs4557256	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4616746	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4631041	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4698402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698404	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698406	0.94[EUR][1000 genomes]
rs4698407	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698409	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61021642	0.89[EUR][1000 genomes]
rs6414765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6414767	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6414768	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6449153	0.97[EUR][1000 genomes]
rs6449161	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6850169	0.85[EUR][1000 genomes]
rs6850422	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7438356	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7684446	0.81[AFR][1000 genomes]
rs7685083	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7687003	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7688984	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7696127	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9997068	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3464794	chr4:15632350-15638142	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3464795	chr4:15632350-15638142	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3379851	chr4:15632399-15638119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7662032	FBXL5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15568400-15655600	Weak transcription	Gastric	stomach
2	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
3	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
4	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
5	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
6	chr4:15618600-15651000	Weak transcription	Spleen	Spleen
7	chr4:15622200-15655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:15622400-15638000	Weak transcription	HepG2	liver
9	chr4:15622400-15639600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:15622600-15645800	Weak transcription	Aorta	Aorta
11	chr4:15623400-15638000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:15624200-15636000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:15625200-15640000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:15625200-15644800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr4:15625400-15643200	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:15625800-15642400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:15625800-15643400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:15625800-15643600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:15625800-15643600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:15625800-15643600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:15626400-15646000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:15627400-15645800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:15627400-15650000	Weak transcription	Fetal Heart	heart
24	chr4:15627400-15651200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:15627400-15652400	Weak transcription	Fetal Brain Male	brain
26	chr4:15627600-15638000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:15627600-15645600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:15627600-15646800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:15627600-15650200	Weak transcription	Right Ventricle	heart
30	chr4:15627800-15638000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:15627800-15638000	Weak transcription	K562	blood
32	chr4:15628000-15638000	Weak transcription	Brain Angular Gyrus	brain
33	chr4:15628000-15640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:15628000-15655600	Weak transcription	Lung	lung
35	chr4:15628200-15638000	Weak transcription	Brain Anterior Caudate	brain
36	chr4:15628200-15645800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:15628400-15638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:15628400-15638000	Weak transcription	Ovary	ovary
39	chr4:15628400-15638000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:15629600-15638000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:15629600-15638000	Weak transcription	NH-A	brain
42	chr4:15629600-15650400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr4:15629800-15638000	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:15631000-15640000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:15631200-15635600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr4:15631200-15644400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:15631800-15635800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:15632000-15638000	Weak transcription	NHLF	lung
49	chr4:15633000-15635800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:15633400-15635600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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