Variant report

Variant	rs7663294
Chromosome Location	chr4:148796464-148796465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148787670..148788596-chr4:148796263..148797180,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10013038	1.00[JPT][hapmap]
rs10022144	1.00[JPT][hapmap]
rs2575585	0.85[CHB][hapmap]
rs6852320	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148768400-148815600	Weak transcription	Primary T cells from cord blood	blood
2	chr4:148772000-148806000	Weak transcription	Fetal Thymus	thymus
3	chr4:148777000-148823000	Weak transcription	Small Intestine	intestine
4	chr4:148777400-148796600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:148782000-148799400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:148784400-148810800	Weak transcription	Fetal Heart	heart
7	chr4:148786000-148804000	Weak transcription	Psoas Muscle	Psoas
8	chr4:148786000-148861400	Weak transcription	Pancreas	Pancrea
9	chr4:148787400-148800400	Weak transcription	NHEK	skin
10	chr4:148787600-148801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:148788000-148798400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:148788000-148800200	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:148788600-148796600	Weak transcription	HMEC	breast
14	chr4:148788600-148796800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:148788800-148803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:148789800-148805800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:148790200-148799000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:148790400-148805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:148790600-148805800	Weak transcription	NHLF	lung
20	chr4:148791600-148804400	Weak transcription	Fetal Intestine Small	intestine
21	chr4:148793000-148797400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr4:148793400-148797600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:148793400-148798000	Strong transcription	HSMM	muscle
24	chr4:148793600-148798400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:148794000-148797400	Strong transcription	Fetal Muscle Leg	muscle
26	chr4:148794000-148797600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:148794000-148798400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:148794000-148799000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:148794800-148810200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:148794800-148824600	Weak transcription	A549	lung
31	chr4:148795400-148797200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:148795600-148797400	Strong transcription	NH-A	brain
33	chr4:148795800-148798000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr4:148796000-148798200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:148796000-148798400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:148796000-148798800	Strong transcription	Adipose Nuclei	Adipose
37	chr4:148796000-148809600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:148796200-148796600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:148796200-148796800	Strong transcription	Aorta	Aorta
40	chr4:148796200-148796800	Strong transcription	Rectal Smooth Muscle	rectum
41	chr4:148796200-148796800	Strong transcription	Thymus	Thymus
42	chr4:148796200-148797000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:148796200-148797000	Strong transcription	Fetal Kidney	kidney
44	chr4:148796200-148797000	Strong transcription	Placenta	Placenta
45	chr4:148796200-148797000	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr4:148796200-148797200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:148796200-148797400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr4:148796200-148797400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:148796200-148797400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:148796200-148797400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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