Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10028067	0.89[AMR][1000 genomes]
rs10857058	0.87[AMR][1000 genomes]
rs10857059	0.82[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs1299129	0.82[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs13108247	0.90[MEX][hapmap]
rs13123305	0.89[AMR][1000 genomes]
rs1871706	0.85[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs1979444	0.90[MEX][hapmap]
rs2903600	0.89[AMR][1000 genomes]
rs4246709	0.87[AMR][1000 genomes]
rs4512020	0.90[MEX][hapmap]
rs6534080	0.89[AMR][1000 genomes]
rs6534090	0.93[CEU][hapmap];0.85[MEX][hapmap]
rs6843690	0.89[AMR][1000 genomes]
rs6854347	0.90[MEX][hapmap]
rs7657727	0.87[AMR][1000 genomes]
rs7664587	0.82[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs7677084	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690151	0.87[AMR][1000 genomes]
rs9307446	0.84[AMR][1000 genomes]
rs931150	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7664339	PRDM8	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79860800-79864200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:79861400-79862800	Enhancers	Fetal Intestine Large	intestine
3	chr4:79861400-79863200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:79861400-79863600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:79861400-79863600	Enhancers	Fetal Intestine Small	intestine
6	chr4:79861600-79863000	Enhancers	K562	blood
7	chr4:79861600-79863200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:79861600-79863400	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:79861600-79864000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:79861600-79864200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:79861800-79862600	Enhancers	Dnd41	blood
12	chr4:79862000-79862800	Bivalent Enhancer	HepG2	liver

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