Variant report

Variant	rs7664556
Chromosome Location	chr4:7990030-7990031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7771826..7772718-chr4:7988877..7990121,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1317285	0.84[EUR][1000 genomes]
rs1574393	0.84[EUR][1000 genomes]
rs16841523	0.89[ASN][1000 genomes]
rs28447132	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28461913	0.84[EUR][1000 genomes]
rs28653042	0.84[EUR][1000 genomes]
rs28712356	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4696662	0.95[ASN][1000 genomes]
rs4696663	0.89[ASN][1000 genomes]
rs4696724	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4696725	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4696927	0.84[EUR][1000 genomes]
rs4696930	0.84[EUR][1000 genomes]
rs4696933	0.87[ASN][1000 genomes]
rs6824006	0.84[EUR][1000 genomes]
rs6830083	0.84[EUR][1000 genomes]
rs6841948	0.91[ASN][1000 genomes]
rs9685030	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv878579	chr4:7969594-8011696	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7975800-8004800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:7978800-8006000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7979600-8011400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:7981000-7992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:7985400-8004800	Weak transcription	Brain Angular Gyrus	brain
6	chr4:7986800-7993600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:7986800-8011400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:7987400-7990600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:7987800-7990800	Weak transcription	Spleen	Spleen
10	chr4:7988000-7994200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:7988200-7990200	Weak transcription	NH-A	brain
12	chr4:7988200-7993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:7988200-7993600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:7988400-7992200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:7988400-7993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:7988400-8001200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:7988600-7996800	Weak transcription	Fetal Intestine Small	intestine
18	chr4:7989000-7993400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:7989400-7990200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:7989400-7990400	Enhancers	A549	lung
21	chr4:7989400-7990400	Enhancers	Osteobl	bone
22	chr4:7989400-7990600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:7989400-7990800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:7989600-7990400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:7989600-7990600	Enhancers	HMEC	breast
26	chr4:7989600-7991400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:7989800-7991400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:7989800-8005800	Weak transcription	Psoas Muscle	Psoas
29	chr4:7990000-7990400	Enhancers	NHLF	lung
30	chr4:7990000-7990600	Enhancers	NHDF-Ad	bronchial

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