Variant report

Variant	rs766502
Chromosome Location	chr12:9908429-9908430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9907740..9910735-chr12:10101487..10103775,2	K562	blood:
2	chr12:9907055..9909270-chr12:10093617..10095503,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10743828	1.00[ASN][1000 genomes]
rs17806015	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136576	1.00[ASN][1000 genomes]
rs3176793	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763299	0.93[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763864	1.00[ASN][1000 genomes]
rs6488176	1.00[ASN][1000 genomes]
rs7969022	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9893400-9910800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:9896400-9911000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:9903400-9917600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:9903600-9911000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:9903800-9911200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr12:9904000-9910200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:9904200-9910800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:9904200-9911200	Weak transcription	Small Intestine	intestine
9	chr12:9904400-9913200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr12:9904600-9913400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
11	chr12:9904800-9908800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr12:9904800-9908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:9905000-9908600	Strong transcription	Primary B cells from cord blood	blood
14	chr12:9905200-9908600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr12:9905200-9908800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr12:9905200-9908800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:9905200-9908800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
18	chr12:9905200-9908800	Strong transcription	K562	blood
19	chr12:9905200-9909400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr12:9905400-9908800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:9905400-9908800	Strong transcription	Fetal Thymus	thymus
22	chr12:9905400-9909200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:9905600-9908800	Strong transcription	Primary hematopoietic stem cells	blood
24	chr12:9905600-9908800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr12:9905600-9908800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr12:9905600-9908800	Strong transcription	GM12878-XiMat	blood
27	chr12:9905600-9909000	Genic enhancers	Primary T cells from cord blood	blood
28	chr12:9905600-9913400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
29	chr12:9905800-9910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr12:9907200-9908800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:9907600-9909400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr12:9907600-9910000	Genic enhancers	Dnd41	blood
33	chr12:9907800-9909200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr12:9908000-9908800	Active TSS	Thymus	Thymus
35	chr12:9908200-9910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr12:9908400-9909600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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