Variant report

Variant	rs7665784
Chromosome Location	chr4:143492963-143492964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143391847..143398603-chr4:143487301..143496810,15	MCF-7	breast:
2	chr4:143391421..143397876-chr4:143484529..143495051,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6537114	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72950761	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143488400-143493400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:143488600-143493400	Weak transcription	Left Ventricle	heart
3	chr4:143489200-143493200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:143489600-143505600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:143489800-143500400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:143489800-143519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:143490000-143493200	Weak transcription	Fetal Heart	heart
8	chr4:143490000-143496400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:143490200-143496200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:143490600-143504600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:143490800-143493200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:143490800-143519200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:143491000-143493600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:143491000-143496200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:143491400-143494000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:143491800-143493600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:143492000-143493600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:143492200-143494600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:143492400-143493000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr4:143492400-143493200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:143492400-143506200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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