Variant report
| Variant | rs7666169 |
|---|---|
| Chromosome Location | chr4:86101835-86101836 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:86100478..86103305-chr4:86104929..86106522,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:68)
| rs_ID | r2[population] |
|---|---|
| rs10516739 | 1.00[ASN][1000 genomes] |
| rs11097043 | 0.97[ASN][1000 genomes] |
| rs11097048 | 0.95[ASN][1000 genomes] |
| rs11722654 | 0.99[ASN][1000 genomes] |
| rs11722718 | 0.99[ASN][1000 genomes] |
| rs11726526 | 0.95[ASN][1000 genomes] |
| rs11728362 | 0.99[ASN][1000 genomes] |
| rs11730119 | 0.99[ASN][1000 genomes] |
| rs11730378 | 1.00[ASN][1000 genomes] |
| rs11730800 | 0.97[ASN][1000 genomes] |
| rs11731748 | 0.99[ASN][1000 genomes] |
| rs11731930 | 0.99[ASN][1000 genomes] |
| rs11733099 | 0.96[ASN][1000 genomes] |
| rs11733967 | 0.99[ASN][1000 genomes] |
| rs11734003 | 0.99[ASN][1000 genomes] |
| rs11734764 | 0.99[ASN][1000 genomes] |
| rs11734767 | 0.94[ASN][1000 genomes] |
| rs11734851 | 1.00[ASN][1000 genomes] |
| rs11734891 | 1.00[ASN][1000 genomes] |
| rs11735698 | 1.00[ASN][1000 genomes] |
| rs11735707 | 0.99[ASN][1000 genomes] |
| rs12502228 | 1.00[ASN][1000 genomes] |
| rs12502337 | 1.00[ASN][1000 genomes] |
| rs12512485 | 0.99[ASN][1000 genomes] |
| rs13110417 | 1.00[ASN][1000 genomes] |
| rs13119875 | 1.00[ASN][1000 genomes] |
| rs13120005 | 1.00[ASN][1000 genomes] |
| rs13120174 | 1.00[ASN][1000 genomes] |
| rs13120351 | 1.00[ASN][1000 genomes] |
| rs13120482 | 1.00[ASN][1000 genomes] |
| rs13127310 | 1.00[ASN][1000 genomes] |
| rs13130662 | 1.00[ASN][1000 genomes] |
| rs13134435 | 0.88[ASN][1000 genomes] |
| rs13141630 | 1.00[ASN][1000 genomes] |
| rs13142499 | 1.00[ASN][1000 genomes] |
| rs2869277 | 0.99[ASN][1000 genomes] |
| rs2869279 | 0.99[ASN][1000 genomes] |
| rs2869308 | 1.00[ASN][1000 genomes] |
| rs2869309 | 0.99[ASN][1000 genomes] |
| rs2904044 | 0.94[ASN][1000 genomes] |
| rs34021845 | 1.00[ASN][1000 genomes] |
| rs34474240 | 1.00[ASN][1000 genomes] |
| rs35854027 | 1.00[ASN][1000 genomes] |
| rs35869028 | 1.00[ASN][1000 genomes] |
| rs4286511 | 0.99[ASN][1000 genomes] |
| rs4288000 | 1.00[ASN][1000 genomes] |
| rs4326002 | 1.00[ASN][1000 genomes] |
| rs4438754 | 1.00[ASN][1000 genomes] |
| rs4450922 | 1.00[ASN][1000 genomes] |
| rs4452424 | 0.99[ASN][1000 genomes] |
| rs4585290 | 1.00[ASN][1000 genomes] |
| rs4619883 | 0.98[ASN][1000 genomes] |
| rs5016524 | 0.86[ASN][1000 genomes] |
| rs55916595 | 0.99[ASN][1000 genomes] |
| rs56235878 | 1.00[ASN][1000 genomes] |
| rs57520456 | 0.87[ASN][1000 genomes] |
| rs60520345 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61192408 | 0.99[ASN][1000 genomes] |
| rs61225120 | 1.00[ASN][1000 genomes] |
| rs67621507 | 0.92[ASN][1000 genomes] |
| rs6819670 | 1.00[ASN][1000 genomes] |
| rs6821955 | 0.95[ASN][1000 genomes] |
| rs6827141 | 1.00[ASN][1000 genomes] |
| rs6841089 | 1.00[ASN][1000 genomes] |
| rs6842256 | 0.91[ASN][1000 genomes] |
| rs6853683 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7349600 | 0.99[ASN][1000 genomes] |
| rs7700241 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1829655 | chr4:85577491-86292692 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv519588 | chr4:85762385-86591202 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv3367963 | chr4:85911017-86246036 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv461566 | chr4:85988032-86725502 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv594747 | chr4:85988032-86725502 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv470048 | chr4:85998783-86720838 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 7 | nsv427685 | chr4:86032872-86340548 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv2763823 | chr4:86097221-86120444 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 9 | nsv594748 | chr4:86100764-86103810 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 10 | nsv594749 | chr4:86100764-86104031 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 11 | nsv516778 | chr4:86100764-86109620 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 12 | nsv594750 | chr4:86100764-86109620 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 13 | nsv594751 | chr4:86100764-86117898 | ZNF genes & repeats Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 14 | nsv1008465 | chr4:86100884-86133333 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 15 | nsv594752 | chr4:86101484-86119905 | Enhancers Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:86101600-86102200 | Enhancers | NHEK | skin |
