Variant report

Variant	rs7666272
Chromosome Location	chr4:76839329-76839330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6819442	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7666272	CXCL10	Cis_1M	lymphoblastoid	RTeQTL
rs7666272	NAAA	cis	Whole Blood	GTEx
rs7666272	ASAHL	Cis_1M	lymphoblastoid	RTeQTL
rs7666272	NAAA	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76824800-76841000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:76827600-76841000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:76830200-76839600	Weak transcription	Primary B cells from cord blood	blood
4	chr4:76831000-76840800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:76831600-76841800	Weak transcription	NHDF-Ad	bronchial
6	chr4:76832400-76841000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:76832600-76859000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr4:76833000-76841000	Weak transcription	Dnd41	blood
9	chr4:76833000-76842000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:76833400-76841000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:76833400-76841000	Weak transcription	Hela-S3	cervix
12	chr4:76833800-76851200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:76833800-76856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:76833800-76860800	Weak transcription	Fetal Heart	heart
15	chr4:76834000-76841000	Weak transcription	Aorta	Aorta
16	chr4:76834000-76847000	Strong transcription	Primary T cells from cord blood	blood
17	chr4:76834200-76851200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:76834400-76839800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:76834600-76841000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:76834600-76841000	Weak transcription	HSMMtube	muscle
21	chr4:76835000-76847200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr4:76835000-76847400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:76835000-76859400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:76835000-76859600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:76835200-76839600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:76835200-76841600	Weak transcription	NHEK	skin
27	chr4:76835200-76859800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:76835400-76845200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:76835400-76845400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:76835600-76839800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:76835600-76842200	Weak transcription	Brain Angular Gyrus	brain
32	chr4:76836600-76841200	Weak transcription	Thymus	Thymus
33	chr4:76836800-76839600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:76836800-76841000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:76836800-76841000	Weak transcription	Lung	lung
36	chr4:76836800-76847400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:76837000-76839800	Weak transcription	Placenta	Placenta
38	chr4:76837000-76840800	Weak transcription	Esophagus	oesophagus
39	chr4:76837000-76851400	Weak transcription	Fetal Thymus	thymus
40	chr4:76837000-76857200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:76837000-76860200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr4:76837200-76839600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr4:76837200-76841000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:76837200-76841000	Weak transcription	Colonic Mucosa	Colon
45	chr4:76837200-76845000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr4:76837200-76860800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:76837200-76860800	Weak transcription	HSMM	muscle
48	chr4:76837400-76841400	Weak transcription	Fetal Lung	lung
49	chr4:76837600-76839600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:76837600-76840800	Weak transcription	Brain Anterior Caudate	brain

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