Variant report
| Variant | rs7667156 |
|---|---|
| Chromosome Location | chr4:78388108-78388109 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:78386121..78388787-chr4:78517468..78520191,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10025726 | 0.87[AMR][1000 genomes] |
| rs11097799 | 0.83[AMR][1000 genomes] |
| rs11097800 | 0.81[AMR][1000 genomes] |
| rs11722002 | 0.83[AMR][1000 genomes] |
| rs11728579 | 0.84[AMR][1000 genomes] |
| rs11735579 | 0.86[AMR][1000 genomes] |
| rs11736723 | 0.83[AMR][1000 genomes] |
| rs12499114 | 0.83[AMR][1000 genomes] |
| rs12504467 | 0.83[AMR][1000 genomes] |
| rs13123684 | 0.86[AMR][1000 genomes] |
| rs13143976 | 0.87[AMR][1000 genomes] |
| rs1348298 | 0.87[AMR][1000 genomes] |
| rs1348299 | 0.87[AMR][1000 genomes] |
| rs1348300 | 0.87[AMR][1000 genomes] |
| rs1372788 | 0.81[AMR][1000 genomes] |
| rs1992490 | 0.87[AMR][1000 genomes] |
| rs1992491 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28583113 | 0.87[AMR][1000 genomes] |
| rs2866295 | 0.84[AMR][1000 genomes] |
| rs34026755 | 0.86[AMR][1000 genomes] |
| rs35142522 | 0.86[AMR][1000 genomes] |
| rs4859848 | 0.84[AMR][1000 genomes] |
| rs60723709 | 0.85[AMR][1000 genomes] |
| rs6831175 | 0.88[AMR][1000 genomes] |
| rs7694337 | 0.87[AMR][1000 genomes] |
| rs7699240 | 0.87[AMR][1000 genomes] |
| rs894436 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs894437 | 0.87[AMR][1000 genomes] |
| rs894438 | 0.87[AMR][1000 genomes] |
| rs894439 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3434529 | chr4:78388030-78470631 | Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:78388000-78394400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
