Variant report

Variant	rs766764
Chromosome Location	chr12:29396818-29396819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11050133	0.89[EUR][1000 genomes]
rs11050134	1.00[EUR][1000 genomes]
rs11050137	0.89[EUR][1000 genomes]
rs11050138	0.90[EUR][1000 genomes]
rs11050164	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11050165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11050166	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11050172	0.89[ASN][1000 genomes]
rs11050211	0.89[ASN][1000 genomes]
rs12299091	1.00[EUR][1000 genomes]
rs12299148	1.00[EUR][1000 genomes]
rs12299228	1.00[EUR][1000 genomes]
rs12301257	0.89[ASN][1000 genomes]
rs12301468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12304675	0.89[ASN][1000 genomes]
rs12307346	0.89[EUR][1000 genomes]
rs12309283	1.00[EUR][1000 genomes]
rs12309340	1.00[EUR][1000 genomes]
rs12314513	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12316548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12319661	1.00[EUR][1000 genomes]
rs12319953	0.89[ASN][1000 genomes]
rs12320498	1.00[EUR][1000 genomes]
rs12322493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16934037	1.00[EUR][1000 genomes]
rs16934110	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28559992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7960832	0.90[EUR][1000 genomes]
rs7960834	0.89[EUR][1000 genomes]
rs9804966	1.00[EUR][1000 genomes]
rs9804995	1.00[EUR][1000 genomes]
rs9804996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29391600-29400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:29391800-29400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:29393200-29397000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:29394400-29397600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr12:29394400-29397800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:29395000-29397200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:29395000-29397400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:29395000-29397600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:29395000-29398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:29395600-29397800	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:29396000-29397800	Enhancers	HUVEC	blood vessel
12	chr12:29396000-29398400	Weak transcription	Small Intestine	intestine
13	chr12:29396000-29400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:29396000-29400200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:29396200-29397200	Weak transcription	NHDF-Ad	bronchial
16	chr12:29396200-29397200	Weak transcription	Osteobl	bone
17	chr12:29396200-29399000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:29396600-29397200	Enhancers	Duodenum Mucosa	Duodenum
19	chr12:29396600-29398200	Weak transcription	Adipose Nuclei	Adipose
20	chr12:29396800-29397400	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr12:29396800-29397800	Weak transcription	GM12878-XiMat	blood
22	chr12:29396800-29413200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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