Variant report

Variant	rs7668462
Chromosome Location	chr4:124630873-124630874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPRY1-5	chr4:124630613-124631117	l_2722_chr4:124630612-124637560_placenta

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10002832	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10003021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028082	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10031024	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10031632	0.94[EUR][1000 genomes]
rs10031894	0.94[EUR][1000 genomes]
rs11098722	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11729742	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425403	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1425404	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1425406	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1425407	0.87[EUR][1000 genomes]
rs1433219	0.93[EUR][1000 genomes]
rs17007241	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17007305	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1895754	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194866	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28361300	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28361543	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28376823	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28470742	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28493674	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28595508	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28670181	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28699481	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28805878	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833290	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833291	0.85[EUR][1000 genomes]
rs4833292	0.92[EUR][1000 genomes]
rs4833935	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833939	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4833942	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4833945	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4833946	0.95[EUR][1000 genomes]
rs4833947	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833948	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833949	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833952	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57927362	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57978274	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59468019	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821590	0.89[EUR][1000 genomes]
rs6827679	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6828406	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847358	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72929724	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929781	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7659116	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7677587	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7691744	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692299	0.92[EUR][1000 genomes]
rs7699549	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9631736	0.85[EUR][1000 genomes]
rs9992459	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830047	chr4:124504051-124699142	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124618400-124632000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:124621600-124631400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:124622000-124636200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:124622000-124637200	Weak transcription	Psoas Muscle	Psoas
5	chr4:124629400-124631000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr4:124629400-124631000	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr4:124629600-124631000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:124630200-124631000	Enhancers	Hela-S3	cervix
9	chr4:124630600-124631000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:124630600-124631000	Enhancers	HUVEC	blood vessel
11	chr4:124630800-124631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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