Variant report

Variant	rs7668839
Chromosome Location	chr4:8548332-8548333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:8548072..8551323-chr4:8572516..8575493,5	MCF-7	breast:
2	chr4:8546192..8549127-chr4:8552223..8554914,2	K562	blood:
3	chr4:8499473..8501004-chr4:8548114..8550892,2	K562	blood:
4	chr4:8542053..8545358-chr4:8547295..8551816,4	MCF-7	breast:
5	chr4:8460049..8461557-chr4:8548208..8550640,2	MCF-7	breast:
6	chr4:8547302..8552930-chr4:8559663..8563639,8	MCF-7	breast:
7	chr4:8535273..8538017-chr4:8547280..8549775,3	MCF-7	breast:
8	chr4:8544480..8546948-chr4:8548054..8550987,2	K562	blood:
9	chr4:8490067..8491985-chr4:8548125..8550420,2	MCF-7	breast:
10	chr4:8547587..8550346-chr4:8589117..8591927,3	MCF-7	breast:
11	chr4:8470194..8471378-chr4:8548265..8549392,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155269	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10805208	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10805209	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10938720	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10938721	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10938722	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10938723	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11723202	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11732364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736996	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17204393	0.87[EUR][1000 genomes]
rs3103086	0.88[ASN][1000 genomes]
rs3115408	0.83[ASN][1000 genomes]
rs34257763	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4414938	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4449400	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4561917	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4996699	0.83[ASN][1000 genomes]
rs55723892	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56379295	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61570587	0.85[EUR][1000 genomes]
rs7674109	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687248	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs868591	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv461221	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv593640	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv878612	chr4:8534283-8618916	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1832730	chr4:8541086-9514568	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
7	esv1843578	chr4:8541086-9514568	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8541600-8549000	Weak transcription	HMEC	breast
2	chr4:8542200-8548800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:8544400-8551600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:8544400-8552600	Enhancers	Placenta	Placenta
5	chr4:8544800-8549600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:8544800-8556600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:8546600-8550200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:8546800-8551000	Weak transcription	Spleen	Spleen
9	chr4:8547200-8548800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:8547200-8548800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:8547400-8548800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:8547400-8548800	Weak transcription	Osteobl	bone
13	chr4:8547600-8548400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:8547600-8548800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:8547600-8548800	Weak transcription	NHDF-Ad	bronchial
16	chr4:8547600-8549000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:8547600-8549000	Weak transcription	HSMM	muscle
18	chr4:8547600-8549400	Weak transcription	NHLF	lung
19	chr4:8547600-8552400	Weak transcription	HSMMtube	muscle
20	chr4:8547800-8548800	Weak transcription	Stomach Mucosa	stomach
21	chr4:8547800-8549000	Enhancers	K562	blood
22	chr4:8547800-8550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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