Variant report

Variant	rs7670182
Chromosome Location	chr4:119716338-119716339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119715898..119718716-chr4:119755472..119757940,2	K562	blood:
2	chr4:119715812..119718716-chr4:119755325..119757940,3	K562	blood:

Variant related genes	Relation type
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11730728	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11735989	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11945703	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs12648682	0.81[CEU][hapmap]
rs13105145	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13105732	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13115157	0.82[CEU][hapmap]
rs13124091	0.82[CEU][hapmap]
rs13146440	0.86[CEU][hapmap];0.88[TSI][hapmap]
rs13146816	0.86[CEU][hapmap];0.87[TSI][hapmap]
rs13150663	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029399	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs2046779	0.86[CEU][hapmap];0.87[TSI][hapmap]
rs2288307	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3087958	0.82[CEU][hapmap]
rs34270389	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34628947	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35071348	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3733517	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs6813357	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs6817440	0.83[YRI][hapmap]
rs6821350	0.85[TSI][hapmap]
rs6827740	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829010	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847706	0.86[CEU][hapmap];0.88[TSI][hapmap]
rs6849714	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853722	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6857285	0.86[CEU][hapmap];0.88[TSI][hapmap]
rs7653962	0.86[CEU][hapmap]
rs7662650	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7666673	0.89[YRI][hapmap]
rs7681835	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7692721	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs7695602	0.86[CEU][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7670182	FGF2	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
2	chr4:119678600-119717400	Weak transcription	Esophagus	oesophagus
3	chr4:119679000-119717600	Weak transcription	Colonic Mucosa	Colon
4	chr4:119688600-119717400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:119688600-119717400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:119688600-119732600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:119688800-119716800	Weak transcription	Fetal Kidney	kidney
8	chr4:119689400-119716600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:119689400-119716800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:119689600-119717600	Weak transcription	K562	blood
11	chr4:119690000-119717600	Weak transcription	Primary T cells from cord blood	blood
12	chr4:119694000-119717400	Weak transcription	Ovary	ovary
13	chr4:119694400-119716600	Weak transcription	Aorta	Aorta
14	chr4:119695000-119717600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:119696800-119717400	Weak transcription	Spleen	Spleen
16	chr4:119702600-119717600	Weak transcription	Fetal Brain Male	brain
17	chr4:119703400-119732200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr4:119703800-119738200	Strong transcription	Placenta	Placenta
19	chr4:119704200-119740000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:119704400-119717600	Weak transcription	Pancreas	Pancrea
21	chr4:119704600-119716400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:119704600-119717600	Weak transcription	Small Intestine	intestine
23	chr4:119704800-119735200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:119705200-119716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:119705200-119716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:119705200-119716600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:119705200-119717400	Weak transcription	Left Ventricle	heart
28	chr4:119705200-119717400	Weak transcription	HMEC	breast
29	chr4:119705200-119717600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:119705200-119717800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:119705200-119721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:119705200-119748200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr4:119706400-119716600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:119707800-119730800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:119708000-119717000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr4:119708000-119732800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr4:119708200-119716400	Weak transcription	Fetal Lung	lung
38	chr4:119708400-119717200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:119708400-119723000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:119708800-119722200	Strong transcription	Liver	Liver
41	chr4:119709400-119716400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:119709600-119719800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr4:119710000-119717000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:119710000-119717400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:119710200-119716800	Weak transcription	Fetal Thymus	thymus
46	chr4:119710200-119716800	Weak transcription	GM12878-XiMat	blood
47	chr4:119710200-119719200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:119710400-119716600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:119710600-119716600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:119710600-119717200	Weak transcription	Fetal Heart	heart

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